| Order | Family | Species | Occurrence | FishBase name | Name in Country |
|---|---|---|---|---|---|
| Lophiiformes | Antennariidae | Abantennarius coccineus | native | Scarlet frogfish | Bantol |
| Lophiiformes | Antennariidae | Abantennarius dorehensis | native | New Guinean frogfish | |
| Lophiiformes | Antennariidae | Abantennarius nummifer | native | Spotfin frogfish | |
| Lophiiformes | Antennariidae | Abantennarius rosaceus | native | Spiny-tufted frogfish | |
| Beloniformes | Belonidae | Ablennes hians | native | Flat needlefish | Salasang dilaw |
| Ovalentaria/misc | Pomacentridae | Abudefduf bengalensis | native | Bengal sergeant | Kapal |
| Ovalentaria/misc | Pomacentridae | Abudefduf lorenzi | native | Black-tail sergeant | |
| Ovalentaria/misc | Pomacentridae | Abudefduf notatus | native | Yellowtail sergeant | Kapal |
| Ovalentaria/misc | Pomacentridae | Abudefduf septemfasciatus | native | Banded sergeant | Buring |
| Ovalentaria/misc | Pomacentridae | Abudefduf sexfasciatus | native | Scissortail sergeant | Kikiringan |
| Ovalentaria/misc | Pomacentridae | Abudefduf sordidus | native | Blackspot sergeant | Amangpang |
| Ovalentaria/misc | Pomacentridae | Abudefduf vaigiensis | native | Indo-Pacific sergeant | Kikiringan |
| Ovalentaria/misc | Pomacentridae | Acanthochromis polyacanthus | native | Spiny chromis | Palata |
| Ovalentaria/misc | Plesiopidae | Acanthoplesiops hiatti | native | Hiatt's basslet | |
| Acanthuriformes | Acanthuridae | Acanthurus albimento | native | Whitechin surgeonfish | Whitechin surgeonfish |
| Acanthuriformes | Acanthuridae | Acanthurus auranticavus | native | Orange-socket surgeonfish | Indangan |
| Acanthuriformes | Acanthuridae | Acanthurus bariene | native | Black-spot surgeonfish | Indangan |
| Acanthuriformes | Acanthuridae | Acanthurus blochii | native | Ringtail surgeonfish | Labahita |
| Acanthuriformes | Acanthuridae | Acanthurus dussumieri | native | Eyestripe surgeonfish | Papakol |
| Acanthuriformes | Acanthuridae | Acanthurus fowleri | native | Fowler's surgeonfish | Labahita |
| Acanthuriformes | Acanthuridae | Acanthurus grammoptilus | native | Finelined surgeonfish | Komang |
| Acanthuriformes | Acanthuridae | Acanthurus guttatus | native | Whitespotted surgeonfish | Indangan |
| Acanthuriformes | Acanthuridae | Acanthurus japonicus | native | Japan surgeonfish | Labahita |
| Acanthuriformes | Acanthuridae | Acanthurus leucocheilus | native | Palelipped surgeonfish | Labahita |
| Acanthuriformes | Acanthuridae | Acanthurus leucopareius | native | Whitebar surgeonfish | Labahita |
| Acanthuriformes | Acanthuridae | Acanthurus lineatus | native | Lined surgeonfish | Lapus lapus |
| Acanthuriformes | Acanthuridae | Acanthurus maculiceps | native | White-freckled surgeonfish | Indangan |
| Acanthuriformes | Acanthuridae | Acanthurus mata | native | Elongate surgeonfish | Saplan |
| Acanthuriformes | Acanthuridae | Acanthurus nigricans | native | Whitecheek surgeonfish | Papakol |
| Acanthuriformes | Acanthuridae | Acanthurus nigricauda | native | Epaulette surgeonfish | Indangan |
| Acanthuriformes | Acanthuridae | Acanthurus nigrofuscus | native | Brown surgeonfish | Indangan |
| Acanthuriformes | Acanthuridae | Acanthurus nigroris | native | Bluelined surgeonfish | Labahita |
| Acanthuriformes | Acanthuridae | Acanthurus nubilus | native | Bluelined surgeon | |
| Acanthuriformes | Acanthuridae | Acanthurus olivaceus | native | Orangespot surgeonfish | Tarian |
| Acanthuriformes | Acanthuridae | Acanthurus pyroferus | native | Chocolate surgeonfish | Labahita |
| Acanthuriformes | Acanthuridae | Acanthurus thompsoni | native | Thompson's surgeonfish | Indangan |
| Acanthuriformes | Acanthuridae | Acanthurus triostegus | native | Convict surgeonfish | Indangan |
| Acanthuriformes | Acanthuridae | Acanthurus xanthopterus | native | Yellowfin surgeonfish | Labahita |
| Gobiiformes | Gobiidae | Acentrogobius janthinopterus | native | Robust mangrove goby | Bia |
| Gobiiformes | Gobiidae | Acentrogobius nebulosus | native | Shadow goby | Biyang dagat |
| Syngnathiformes | Syngnathidae | Acentronura breviperula | native | ||
| Syngnathiformes | Syngnathidae | Acentronura tentaculata | native | Shortpouch pygmy pipehorse | |
| Tetraodontiformes | Monacanthidae | Acreichthys radiatus | native | Radial leatherjacket | Papakol |
| Tetraodontiformes | Monacanthidae | Acreichthys tomentosus | native | Bristle-tail file-fish | Kakaniten |
| Syngnathiformes | Centriscidae | Aeoliscus strigatus | native | Razorfish | Isdang sikwan |
| Pleuronectiformes | Soleidae | Aesopia cornuta | native | Unicorn sole | Darapa |
| Perciformes/Serranoidei | Epinephelidae | Aethaloperca rogaa | native | Redmouth grouper | Kubing |
| Gobiiformes | Microdesmidae | Aioliops brachypterus | native | Shortfin minidartfish | |
| Gobiiformes | Microdesmidae | Aioliops megastigma | native | Bigspot minidartfish | |
| Albuliformes | Albulidae | Albula vulpes | native | Bonefish | Bidbid |
| Carangiformes | Carangidae | Alectis ciliaris | native | African pompano | Damis-lawin |
| Carangiformes | Carangidae | Alepes djedaba | native | Shrimp scad | Salay-salay |
| Carangiformes | Carangidae | Alepes kleinii | native | Razorbelly scad | Tigasin |
| Ophidiiformes | Dinematichthyidae | Alionematichthys piger | native | Whiskered viviparous brotula | |
| Ophidiiformes | Dinematichthyidae | Alionematichthys plicatosurculus | native | Folded viviparous brotula | |
| Ophidiiformes | Dinematichthyidae | Alionematichthys riukiuensis | native | Bigeye cusk | |
| Ophidiiformes | Dinematichthyidae | Alionematichthys suluensis | native | Sulu viviparous brotula | |
| Ovalentaria/misc | Pomacentridae | Altrichthys alelia | native | Alelia’s damselfish | Alelia’s damselfish |
| Ovalentaria/misc | Pomacentridae | Altrichthys azurelineatus | native | Azure damselfish | Silver-streaked damselfish |
| Ovalentaria/misc | Pomacentridae | Altrichthys curatus | native | Guardian damselfish | Guardian damselfish |
| Tetraodontiformes | Monacanthidae | Aluterus monoceros | native | Unicorn leatherjacket filefish | Tiwarik |
| Tetraodontiformes | Monacanthidae | Aluterus scriptus | native | Scribbled leatherjacket filefish | Tiwarik |
| Tetraodontiformes | Monacanthidae | Amanses scopas | native | Broom filefish | Kakaniten |
| Centrarchiformes | Cirrhitidae | Amblycirrhitus bimacula | native | Twospot hawkfish | |
| Gobiiformes | Gobiidae | Amblyeleotris diagonalis | native | Diagonal shrimp goby | Paku |
| Gobiiformes | Gobiidae | Amblyeleotris fasciata | native | Red-banded prawn-goby | Bia |
| Gobiiformes | Gobiidae | Amblyeleotris fontanesii | native | Giant prawn-goby | Bia |
| Gobiiformes | Gobiidae | Amblyeleotris guttata | native | Spotted prawn-goby | Bia |
| Gobiiformes | Gobiidae | Amblyeleotris gymnocephala | native | Masked shrimpgoby | |
| Gobiiformes | Gobiidae | Amblyeleotris periophthalma | native | Periophthalma prawn-goby | Bia |
| Gobiiformes | Gobiidae | Amblyeleotris randalli | native | Randall's prawn-goby | Bia |
| Gobiiformes | Gobiidae | Amblyeleotris rhyax | native | Volcano shrimpgoby | |
| Gobiiformes | Gobiidae | Amblyeleotris steinitzi | native | Steinitz' prawn-goby | Bia |
| Gobiiformes | Gobiidae | Amblyeleotris wheeleri | native | Gorgeous prawn-goby | Bia |
| Gobiiformes | Gobiidae | Amblyeleotris yanoi | native | Flagtail shrimpgoby | |
| Clupeiformes | Dorosomatidae | Amblygaster clupeoides | native | Bleeker smoothbelly sardinella | Tamban |
| Clupeiformes | Dorosomatidae | Amblygaster sirm | native | Spotted sardinella | Tamban |
| Ovalentaria/misc | Pomacentridae | Amblyglyphidodon aureus | native | Golden damselfish | Palata |
| Ovalentaria/misc | Pomacentridae | Amblyglyphidodon batunaorum | native | Batuna's damselfish | Palata |
| Ovalentaria/misc | Pomacentridae | Amblyglyphidodon curacao | native | Staghorn damselfish | Kikiringan |
| Ovalentaria/misc | Pomacentridae | Amblyglyphidodon leucogaster | native | Yellowbelly damselfish | Kikiringan |
| Ovalentaria/misc | Pomacentridae | Amblyglyphidodon ternatensis | native | Ternate damsel | |
| Gobiiformes | Gobiidae | Amblygobius albimaculatus | native | Butterfly goby | Bia |
| Gobiiformes | Gobiidae | Amblygobius buanensis | native | Buan goby | Paku |
| Gobiiformes | Gobiidae | Amblygobius calvatus | native | Baldhead siltgoby | Baldhead siltgoby |
| Gobiiformes | Gobiidae | Amblygobius cheraphilus | native | East Indies siltgoby | |
| Gobiiformes | Gobiidae | Amblygobius decussatus | native | Orange-striped goby | Bia |
| Gobiiformes | Gobiidae | Amblygobius linki | native | Link's goby | Bia |
| Gobiiformes | Gobiidae | Amblygobius nocturnus | native | Nocturn goby | Bia |
| Gobiiformes | Gobiidae | Amblygobius phalaena | native | Whitebarred goby | Bia |
| Gobiiformes | Gobiidae | Amblygobius sphynx | native | Sphinx goby | Bia |
| Ovalentaria/misc | Pomacentridae | Amblypomacentrus breviceps | native | Black-banded demoiselle | Tamungku |
| Ovalentaria/misc | Pomacentridae | Amblypomacentrus clarus | native | Banggai damselfish | |
| Ovalentaria/misc | Pomacentridae | Amblypomacentrus kuiteri | native | Kuiter's damselfish | |
| Ovalentaria/misc | Pomacentridae | Amblypomacentrus tricinctus | native | Threeband damselfish | |
| Ovalentaria/misc | Pomacentridae | Amphiprion biaculeatus | native | Spinecheek anemonefish | Palata |
| Ovalentaria/misc | Pomacentridae | Amphiprion chrysopterus | native | Orangefin anemonefish | |
| Ovalentaria/misc | Pomacentridae | Amphiprion clarkii | native | Yellowtail clownfish | Tau ng lanagan |
| Ovalentaria/misc | Pomacentridae | Amphiprion frenatus | native | Tomato clownfish | Palata |
| Ovalentaria/misc | Pomacentridae | Amphiprion melanopus | native | Fire clownfish | Mangkot |
| Ovalentaria/misc | Pomacentridae | Amphiprion ocellaris | native | Clown anemonefish | Tau ng lanagan |
| Ovalentaria/misc | Pomacentridae | Amphiprion percula | native | Orange clownfish | Palata |
| Ovalentaria/misc | Pomacentridae | Amphiprion perideraion | native | Pink anemonefish | Palata |
| Ovalentaria/misc | Pomacentridae | Amphiprion polymnus | native | Saddleback clownfish | |
| Ovalentaria/misc | Pomacentridae | Amphiprion sandaracinos | native | Yellow clownfish | Sagalpak |
| Ovalentaria/misc | Pomacentridae | Amphiprion thiellei | native | Thielle's anemonefish | |
| Ovalentaria/misc | Pseudochromidae | Amsichthys knighti | native | Bugeye dottyback | |
| Tetraodontiformes | Monacanthidae | Anacanthus barbatus | native | Bearded leatherjacket | Balbas |
| Eupercaria/misc | Labridae | Anampses caeruleopunctatus | native | Bluespotted wrasse | Mameng |
| Eupercaria/misc | Labridae | Anampses geographicus | native | Geographic wrasse | Bankilan |
| Eupercaria/misc | Labridae | Anampses melanurus | native | White-spotted wrasse | |
| Eupercaria/misc | Labridae | Anampses meleagrides | native | Spotted wrasse | Dulas |
| Eupercaria/misc | Labridae | Anampses neoguinaicus | native | New Guinea wrasse | |
| Eupercaria/misc | Labridae | Anampses twistii | native | Yellowbreasted wrasse | |
| Callionymiformes | Callionymidae | Anaora tentaculata | native | Tentacled dragonet | |
| Blenniiformes | Blenniidae | Andamia reyi | native | Suckerlip blenny | Mangluluksong bato |
| Trachichthyiformes | Anomalopidae | Anomalops katoptron | native | Splitfin flashlightfish | |
| Lophiiformes | Antennariidae | Antennarius commerson | native | Commerson's frogfish | |
| Lophiiformes | Antennariidae | Antennarius hispidus | native | Shaggy angler | |
| Lophiiformes | Antennariidae | Antennarius maculatus | native | Warty frogfish | |
| Lophiiformes | Antennariidae | Antennarius pictus | native | Painted frogfish | |
| Lophiiformes | Antennariidae | Antennarius randalli | native | Randall's frogfish | |
| Lophiiformes | Antennariidae | Antennarius striatus | native | Striated frogfish | Bantol noog-noog |
| Lophiiformes | Antennariidae | Antennatus tuberosus | native | Tuberculated frogfish | |
| Perciformes/Serranoidei | Epinephelidae | Anyperodon leucogrammicus | native | Slender grouper | Lapu lapu |
| Eupercaria/misc | Lutjanidae | Aphareus furca | native | Small toothed jobfish | Bisugo |
| Eupercaria/misc | Lutjanidae | Aphareus rutilans | native | Rusty jobfish | Maya-maya |
| Kurtiformes | Apogonidae | Apogon ceramensis | native | Mangrove cardinalfish | |
| Kurtiformes | Apogonidae | Apogon coccineus | native | Ruby cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Apogon crassiceps | native | Transparent cardinalfish | |
| Kurtiformes | Apogonidae | Apogon doryssa | native | Longspine cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Apogon posterofasciatus | native | Rearbar cardinalfish | |
| Kurtiformes | Apogonidae | Apogon seminigracaudus | native | Darktail cardinalfish | |
| Kurtiformes | Apogonidae | Apogon semiornatus | native | Oblique-banded cardinalfish | |
| Kurtiformes | Apogonidae | Apogon talboti | native | Flame cardinalfish | |
| Kurtiformes | Apogonidae | Apogon tricinctus | native | Threeband cardinalfish | |
| Kurtiformes | Apogonidae | Apogonichthyoides melas | native | Black cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Apogonichthyoides pseudotaeniatus | native | Doublebar cardinalfish | |
| Kurtiformes | Apogonidae | Apogonichthyoides timorensis | native | Timor cardinalfish | |
| Kurtiformes | Apogonidae | Apogonichthys ocellatus | native | Ocellated cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Apogonichthys perdix | native | Perdix cardinalfish | Suga |
| Acanthuriformes | Pomacanthidae | Apolemichthys trimaculatus | native | Threespot angelfish | Mameng |
| Perciformes/Serranoidei | Grammistidae | Aporops bilinearis | native | Blotched podge | |
| Eupercaria/misc | Lutjanidae | Aprion virescens | native | Green jobfish | Maya maya |
| Kurtiformes | Apogonidae | Archamia bleekeri | native | Gon's cardinalfish | |
| Anguilliformes | Congridae | Ariosoma scheelei | native | Tropical conger | |
| Tetraodontiformes | Tetraodontidae | Arothron caeruleopunctatus | native | Blue-spotted puffer | Butiti |
| Tetraodontiformes | Tetraodontidae | Arothron hispidus | native | White-spotted puffer | Butete |
| Tetraodontiformes | Tetraodontidae | Arothron immaculatus | native | Immaculate puffer | Mosi |
| Tetraodontiformes | Tetraodontidae | Arothron manilensis | native | Narrow-lined puffer | Butete |
| Tetraodontiformes | Tetraodontidae | Arothron mappa | native | Map puffer | Butete |
| Tetraodontiformes | Tetraodontidae | Arothron meleagris | native | Guineafowl puffer | Butete |
| Tetraodontiformes | Tetraodontidae | Arothron nigropunctatus | native | Blackspotted puffer | Butiti |
| Tetraodontiformes | Tetraodontidae | Arothron reticularis | native | Reticulated pufferfish | Tikong |
| Tetraodontiformes | Tetraodontidae | Arothron stellatus | native | Stellate puffer | Butete |
| Pleuronectiformes | Soleidae | Aseraggodes cyaneus | native | ||
| Pleuronectiformes | Soleidae | Aseraggodes winterbottomi | native | Negros sole | |
| Blenniiformes | Blenniidae | Aspidontus dussumieri | native | Lance blenny | |
| Blenniiformes | Blenniidae | Aspidontus taeniatus | native | False cleanerfish | |
| Ovalentaria/misc | Plesiopidae | Assessor randalli | native | ||
| Pleuronectiformes | Bothidae | Asterorhombus filifer | native | Longlure flounder | |
| Pleuronectiformes | Bothidae | Asterorhombus intermedius | native | Intermediate flounder | Dapang bilog |
| Gobiiformes | Gobiidae | Asterropteryx atripes | native | Yano’s starry goby | |
| Gobiiformes | Gobiidae | Asterropteryx bipunctata | native | Orange-spotted goby | |
| Gobiiformes | Gobiidae | Asterropteryx ensifera | native | Miller's damsel | Bia |
| Gobiiformes | Gobiidae | Asterropteryx profunda | native | Deepwater goby | |
| Gobiiformes | Gobiidae | Asterropteryx semipunctata | native | Starry goby | Bia |
| Gobiiformes | Gobiidae | Asterropteryx spinosa | native | Eyebar spiny goby | Bia |
| Gobiiformes | Gobiidae | Asterropteryx striata | native | ||
| Carcharhiniformes | Atelomycteridae | Atelomycterus marmoratus | native | Coral catshark | Pating |
| Atheriniformes | Atherinidae | Atherinomorus endrachtensis | native | Eendracht Land silverside | Gono |
| Atheriniformes | Atherinidae | Atherinomorus lacunosus | native | Wide-banded hardyhead silverside | Gono |
| Atheriniformes | Atherionidae | Atherion elymus | native | Bearded silverside | |
| Carangiformes | Carangidae | Atropus armatus | native | Longfin trevally | Mirapina |
| Carangiformes | Carangidae | Atropus hedlandensis | native | Bumpnose trevally | Langog |
| Carangiformes | Carangidae | Atropus mentalis | native | Longrakered trevally | Piaka |
| Blenniiformes | Blenniidae | Atrosalarias holomelas | native | Brown coral blenny | |
| Blenniiformes | Blenniidae | Atrosalarias hosokawai | native | Hosokawa's coral blenny | |
| Carangiformes | Carangidae | Atule mate | native | Yellowtail scad | Kalapato |
| Perciformes/Serranoidei | Liopropomatidae | Aulacocephalus temminckii | native | Goldribbon soapfish | |
| Syngnathiformes | Aulostomidae | Aulostomus chinensis | native | Chinese trumpetfish | Trompita |
| Gobiiformes | Gobiidae | Austrolethops wardi | native | Small-eyed goby | Bia |
| Ovalentaria/misc | Pomacentridae | Azurina elerae | native | Twinspot chromis | |
| Ovalentaria/misc | Pomacentridae | Azurina lepidolepis | native | Scaly chromis | Kapal |
| Tetraodontiformes | Balistidae | Balistapus undulatus | native | Orange-lined triggerfish | Pakoy |
| Tetraodontiformes | Balistidae | Balistoides conspicillum | native | Clown triggerfish | Pakoy |
| Tetraodontiformes | Balistidae | Balistoides viridescens | native | Titan triggerfish | Kapuul |
| Gobiiformes | Gobiidae | Bathygobius cocosensis | native | Cocos frill-goby | Bia |
| Gobiiformes | Gobiidae | Bathygobius cotticeps | native | Cheekscaled frill-goby | Bia |
| Gobiiformes | Gobiidae | Bathygobius cyclopterus | native | Spotted frillgoby | Bia |
| Gobiiformes | Gobiidae | Bathygobius fuscus | native | Dusky frillgoby | Bia |
| Gobiiformes | Gobiidae | Bathygobius laddi | native | Brownboy goby | |
| Ovalentaria/misc | Plesiopidae | Belonepterygion fasciolatum | native | Barred spiny basslet | |
| Perciformes/Serranoidei | Liopropomatidae | Belonoperca chabanaudi | native | Arrowhead soapfish | |
| Blenniiformes | Blenniidae | Blenniella bilitonensis | native | Biliton blenniella | |
| Blenniiformes | Blenniidae | Blenniella caudolineata | native | Blue-spotted blenny | |
| Blenniiformes | Blenniidae | Blenniella chrysospilos | native | Red-spotted blenny | |
| Blenniiformes | Blenniidae | Blenniella interrupta | native | Dashed-line blenny | |
| Blenniiformes | Blenniidae | Blenniella periophthalmus | native | Blue-dashed rockskipper | Mangluluksong bato |
| Eupercaria/misc | Labridae | Bodianus anthioides | native | Lyretail hogfish | |
| Eupercaria/misc | Labridae | Bodianus axillaris | native | Axilspot hogfish | Lulukdayan |
| Eupercaria/misc | Labridae | Bodianus bilunulatus | native | Tarry hogfish | Bungat |
| Eupercaria/misc | Labridae | Bodianus bimaculatus | native | Twospot hogfish | |
| Eupercaria/misc | Labridae | Bodianus dictynna | native | Redfin hogfish | |
| Eupercaria/misc | Labridae | Bodianus loxozonus | native | Blackfin hogfish | Bankilan |
| Eupercaria/misc | Labridae | Bodianus mesothorax | native | Splitlevel hogfish | Baga-baga |
| Eupercaria/misc | Scaridae | Bolbometopon muricatum | native | Green humphead parrotfish | Loro |
| Pleuronectiformes | Bothidae | Bothus mancus | native | Flowery flounder | Dapa |
| Pleuronectiformes | Bothidae | Bothus pantherinus | native | Leopard flounder | Dapa |
| Tetraodontiformes | Monacanthidae | Brachaluteres taylori | native | Taylor's inflator filefish | |
| Anguilliformes | Ophichthidae | Brachysomophis crocodilinus | native | Crocodile snake eel | |
| Anguilliformes | Ophichthidae | Brachysomophis henshawi | native | Reptilian snake eel | |
| Ophidiiformes | Bythitidae | Brosmophyciops pautzkei | native | Slimy cuskeel | |
| Ophidiiformes | Ophidiidae | Brotula multibarbata | native | Goatsbeard brotula | |
| Gobiiformes | Gobiidae | Bryaninops amplus | native | Large whip goby | Bia |
| Gobiiformes | Gobiidae | Bryaninops erythrops | native | Erythrops goby | Bia |
| Gobiiformes | Gobiidae | Bryaninops isis | native | Isis goby | |
| Gobiiformes | Gobiidae | Bryaninops loki | native | Loki whip-goby | |
| Gobiiformes | Gobiidae | Bryaninops natans | native | Redeye goby | Bia |
| Gobiiformes | Gobiidae | Bryaninops tigris | native | Black coral goby | |
| Gobiiformes | Gobiidae | Bryaninops yongei | native | Whip coral goby | |
| Syngnathiformes | Syngnathidae | Bulbonaricus davaoensis | native | Davao pughead pipefish | |
| Eupercaria/misc | Caesionidae | Caesio caerulaurea | native | Blue and gold fusilier | Dalagang bukid |
| Eupercaria/misc | Caesionidae | Caesio cuning | native | Redbelly yellowtail fusilier | Bilasun |
| Eupercaria/misc | Caesionidae | Caesio lunaris | native | Lunar fusilier | Aha-an |
| Eupercaria/misc | Caesionidae | Caesio teres | native | Yellow and blueback fusilier | Buglawon |
| Anguilliformes | Ophichthidae | Callechelys marmorata | native | Marbled snake eel | Pananglitan |
| Callionymiformes | Callionymidae | Callionymus delicatulus | native | Delicate dragonet | |
| Callionymiformes | Callionymidae | Callionymus enneactis | native | Mangrove dragonet | |
| Callionymiformes | Callionymidae | Callionymus simplicicornis | native | Simple-spined dragonet | |
| Gobiiformes | Gobiidae | Callogobius clitellus | native | Saddled goby | |
| Gobiiformes | Gobiidae | Callogobius hasseltii | native | Hasselt's goby | Bia |
| Gobiiformes | Gobiidae | Callogobius hastatus | native | Spearfin goby | |
| Gobiiformes | Gobiidae | Callogobius maculipinnis | native | Ostrich goby | Bia |
| Gobiiformes | Gobiidae | Callogobius okinawae | native | Okinawa flap-headed goby | Bia |
| Gobiiformes | Gobiidae | Callogobius producta | native | Elongate flap-headed goby | |
| Gobiiformes | Gobiidae | Callogobius sclateri | native | Pacific goby | Bia |
| Ovalentaria/misc | Plesiopidae | Calloplesiops altivelis | native | Comet | |
| Ovalentaria/misc | Plesiopidae | Calloplesiops argus | native | ||
| Eupercaria/misc | Scaridae | Calotomus carolinus | native | Carolines parrotfish | Mulmol |
| Eupercaria/misc | Scaridae | Calotomus japonicus | native | Japanese parrotfish | Molmol |
| Eupercaria/misc | Scaridae | Calotomus spinidens | native | Spinytooth parrotfish | Isdang loro |
| Gobiiformes | Eleotridae | Calumia godeffroyi | native | Tailface sleeper | |
| Tetraodontiformes | Monacanthidae | Cantherhines cerinus | native | Waxy filefish | |
| Tetraodontiformes | Monacanthidae | Cantherhines dumerilii | native | Whitespotted filefish | |
| Tetraodontiformes | Monacanthidae | Cantherhines fronticinctus | native | Spectacled filefish | Kakaniten |
| Tetraodontiformes | Monacanthidae | Cantherhines pardalis | native | Honeycomb filefish | Hagupit |
| Tetraodontiformes | Balistidae | Canthidermis maculata | native | Rough triggerfish | |
| Tetraodontiformes | Tetraodontidae | Canthigaster amboinensis | native | Spider-eye puffer | |
| Tetraodontiformes | Tetraodontidae | Canthigaster axiologus | native | Pacific crown toby | |
| Tetraodontiformes | Tetraodontidae | Canthigaster bennetti | native | Bennett's sharpnose puffer | Butete |
| Tetraodontiformes | Tetraodontidae | Canthigaster compressa | native | Compressed toby | Butete |
| Tetraodontiformes | Tetraodontidae | Canthigaster epilampra | native | Lantern toby | |
| Tetraodontiformes | Tetraodontidae | Canthigaster janthinoptera | native | Honeycomb toby | Butete |
| Tetraodontiformes | Tetraodontidae | Canthigaster leoparda | native | Leopard sharpnose puffer | Butete |
| Tetraodontiformes | Tetraodontidae | Canthigaster ocellicincta | native | Shy toby | |
| Tetraodontiformes | Tetraodontidae | Canthigaster papua | native | Papuan toby | |
| Tetraodontiformes | Tetraodontidae | Canthigaster rivulata | native | Brown-lined puffer | |
| Tetraodontiformes | Tetraodontidae | Canthigaster solandri | native | Spotted sharpnose | Butete |
| Tetraodontiformes | Tetraodontidae | Canthigaster valentini | native | Valentin's sharpnose puffer | Butete |
| Perciformes/Scorpaenoidei | Scorpaenidae | Caracanthus maculatus | native | Spotted coral croucher | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Caracanthus unipinna | native | Pygmy coral croucher | |
| Carangiformes | Carangidae | Carangichthys dinema | native | Shadow trevally | Pampano |
| Carangiformes | Carangidae | Carangichthys oblongus | native | Coachwhip trevally | Sibo |
| Carangiformes | Carangidae | Caranx heberi | native | Blacktip trevally | |
| Carangiformes | Carangidae | Caranx ignobilis | native | Giant trevally | Mamsa |
| Carangiformes | Carangidae | Caranx melampygus | native | Bluefin trevally | Talakitok |
| Carangiformes | Carangidae | Caranx papuensis | native | Brassy trevally | Pampano |
| Carangiformes | Carangidae | Caranx sexfasciatus | native | Bigeye trevally | Sibo |
| Carangiformes | Carangidae | Caranx tille | native | Tille trevally | Sibong baliling |
| Ophidiiformes | Carapidae | Carapus mourlani | native | Star pearlfish | |
| Carcharhiniformes | Carcharhinidae | Carcharhinus albimarginatus | native | Silvertip shark | Pating |
| Carcharhiniformes | Carcharhinidae | Carcharhinus altimus | native | Bignose shark | |
| Carcharhiniformes | Carcharhinidae | Carcharhinus amblyrhynchos | native | Blacktail reef shark | Pating |
| Carcharhiniformes | Carcharhinidae | Carcharhinus brevipinna | native | Spinner shark | Pating |
| Carcharhiniformes | Carcharhinidae | Carcharhinus falciformis | native | Silky shark | Pating |
| Carcharhiniformes | Carcharhinidae | Carcharhinus leucas | native | Bull shark | Pating |
| Carcharhiniformes | Carcharhinidae | Carcharhinus limbatus | native | Blacktip shark | Pating |
| Carcharhiniformes | Carcharhinidae | Carcharhinus melanopterus | native | Blacktip reef shark | Lumba |
| Carcharhiniformes | Carcharhinidae | Carcharhinus sealei | native | Blackspot shark | Pating |
| Carcharhiniformes | Carcharhinidae | Carcharhinus sorrah | native | Spot-tail shark | Pating |
| Lamniformes | Carchariidae | Carcharias taurus | native | Sand tiger shark | |
| Syngnathiformes | Centriscidae | Centriscus scutatus | native | Grooved razor-fish | Ian ng Moros |
| Acanthuriformes | Pomacanthidae | Centropyge bicolor | native | Bicolor angelfish | Boray-boray |
| Acanthuriformes | Pomacanthidae | Centropyge bispinosa | native | Twospined angelfish | Adlo |
| Acanthuriformes | Pomacanthidae | Centropyge colini | native | Cocos-Keeling angelfish | |
| Acanthuriformes | Pomacanthidae | Centropyge ferrugata | native | Rusty angelfish | |
| Acanthuriformes | Pomacanthidae | Centropyge fisheri | native | Orange angelfish | Boray-boray |
| Acanthuriformes | Pomacanthidae | Centropyge flavissima | native | Lemonpeel angelfish | Boray-boray |
| Acanthuriformes | Pomacanthidae | Centropyge heraldi | native | Yellow angelfish | Boray-boray |
| Acanthuriformes | Pomacanthidae | Centropyge loriculus | native | Flame angel | |
| Acanthuriformes | Pomacanthidae | Centropyge nox | native | Midnight angelfish | |
| Acanthuriformes | Pomacanthidae | Centropyge tibicen | native | Keyhole angelfish | Adlo |
| Acanthuriformes | Pomacanthidae | Centropyge venusta | native | Purplemask angelfish | |
| Acanthuriformes | Pomacanthidae | Centropyge vrolikii | native | Pearlscale angelfish | Paro-paro |
| Perciformes/Serranoidei | Epinephelidae | Cephalopholis aitha | native | Rusty hind | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Cephalopholis argus | native | Peacock hind | Baraka |
| Perciformes/Serranoidei | Epinephelidae | Cephalopholis aurantia | native | Golden hind | Lapu lapu |
| Perciformes/Serranoidei | Epinephelidae | Cephalopholis boenak | native | Chocolate hind | Kegkeg |
| Perciformes/Serranoidei | Epinephelidae | Cephalopholis cyanostigma | native | Bluespotted hind | Baskuy |
| Perciformes/Serranoidei | Epinephelidae | Cephalopholis formosa | native | Bluelined hind | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Cephalopholis leopardus | native | Leopard hind | Lapu lapu |
| Perciformes/Serranoidei | Epinephelidae | Cephalopholis microprion | native | Freckled hind | Kegkeg |
| Perciformes/Serranoidei | Epinephelidae | Cephalopholis miniata | native | Coral hind | Lapu lapu |
| Perciformes/Serranoidei | Epinephelidae | Cephalopholis polleni | native | Harlequin hind | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Cephalopholis sexmaculata | native | Sixblotch hind | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Cephalopholis sonnerati | native | Tomato hind | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Cephalopholis spiloparaea | native | Strawberry hind | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Cephalopholis urodeta | native | Darkfin hind | Lapu-lapu |
| Blenniiformes | Tripterygiidae | Ceratobregma helenae | native | Helen's Triplefin | |
| Kurtiformes | Apogonidae | Cercamia cladara | native | Frail cardinalfish | |
| Kurtiformes | Apogonidae | Cercamia eremia | native | Glassy cardinalfish | |
| Eupercaria/misc | Scaridae | Cetoscarus ocellatus | native | Spotted parrotfish | Isdang loro |
| Tetraodontiformes | Monacanthidae | Chaetodermis penicilligerus | native | Prickly leatherjacket | |
| Acanthuriformes | Chaetodontidae | Chaetodon adiergastos | native | Philippine butterflyfish | Dalang bukid |
| Acanthuriformes | Chaetodontidae | Chaetodon argentatus | native | Asian butterflyfish | Asian butterflyfish |
| Acanthuriformes | Chaetodontidae | Chaetodon auriga | native | Threadfin butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon auripes | native | Oriental butterflyfish | Tapel |
| Acanthuriformes | Chaetodontidae | Chaetodon baronessa | native | Eastern triangular butterflyfish | Kalaykalay |
| Acanthuriformes | Chaetodontidae | Chaetodon bennetti | native | Bluelashed butterflyfish | Kalaykalay |
| Acanthuriformes | Chaetodontidae | Chaetodon burgessi | native | Burgess' butterflyfish | Alibang-bang |
| Acanthuriformes | Chaetodontidae | Chaetodon citrinellus | native | Speckled butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon collare | native | Redtail butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon decussatus | native | Indian vagabond butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon ephippium | native | Saddle butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon guentheri | native | Crochet butterflyfish | |
| Acanthuriformes | Chaetodontidae | Chaetodon kleinii | native | Sunburst butterflyfish | Kalaykalay |
| Acanthuriformes | Chaetodontidae | Chaetodon lineolatus | native | Lined butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon lunula | native | Raccoon butterflyfish | Kalaykalay |
| Acanthuriformes | Chaetodontidae | Chaetodon lunulatus | native | Oval butterflyfish | Kalaykalay |
| Acanthuriformes | Chaetodontidae | Chaetodon melannotus | native | Blackback butterflyfish | Kalaykalay |
| Acanthuriformes | Chaetodontidae | Chaetodon mertensii | native | Atoll butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon meyeri | native | Scrawled butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon nippon | native | Japanese butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon ocellicaudus | native | Spot-tail butterflyfish | Paru-parung dagat |
| Acanthuriformes | Chaetodontidae | Chaetodon octofasciatus | native | Eightband butterflyfish | Kalaykalay |
| Acanthuriformes | Chaetodontidae | Chaetodon ornatissimus | native | Ornate butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon oxycephalus | native | Spot-nape butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon plebeius | native | Blueblotch butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon punctatofasciatus | native | Spotband butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon quadrimaculatus | native | Fourspot butterflyfish | |
| Acanthuriformes | Chaetodontidae | Chaetodon rafflesii | native | Latticed butterflyfish | Alibang-bang |
| Acanthuriformes | Chaetodontidae | Chaetodon reticulatus | native | Mailed butterflyfish | Alibang-bang |
| Acanthuriformes | Chaetodontidae | Chaetodon selene | native | Yellow-dotted butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon semeion | native | Dotted butterflyfish | Alibang-bang |
| Acanthuriformes | Chaetodontidae | Chaetodon speculum | native | Mirror butterflyfish | Alibang-bang |
| Acanthuriformes | Chaetodontidae | Chaetodon triangulum | native | Triangle butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon trifascialis | native | Chevron butterflyfish | Alibang-bang |
| Acanthuriformes | Chaetodontidae | Chaetodon ulietensis | native | Pacific double-saddle butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon unimaculatus | native | Teardrop butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Chaetodon vagabundus | native | Vagabond butterflyfish | Kalaykalay |
| Acanthuriformes | Chaetodontidae | Chaetodon wiebeli | native | Hongkong butterflyfish | |
| Acanthuriformes | Chaetodontidae | Chaetodon xanthurus | native | Pearlscale butterflyfish | Philippine chevron butterflyfish |
| Acanthuriformes | Pomacanthidae | Chaetodontoplus caeruleopunctatus | endemic | Bluespotted angelfish | Blue-spotted angelfish |
| Acanthuriformes | Pomacanthidae | Chaetodontoplus chrysocephalus | native | Orangeface angelfish | |
| Acanthuriformes | Pomacanthidae | Chaetodontoplus melanosoma | native | Black-velvet angelfish | Adlo |
| Acanthuriformes | Pomacanthidae | Chaetodontoplus mesoleucus | native | Vermiculated angelfish | Baro-baro |
| Acanthuriformes | Pomacanthidae | Chaetodontoplus niger | native | Black angelfish | |
| Eupercaria/misc | Labridae | Cheilinus chlorourus | native | Floral wrasse | Mameng |
| Eupercaria/misc | Labridae | Cheilinus fasciatus | native | Redbreasted wrasse | Mameng |
| Eupercaria/misc | Labridae | Cheilinus oxycephalus | native | Snooty wrasse | Mameng |
| Eupercaria/misc | Labridae | Cheilinus trilobatus | native | Tripletail wrasse | Mameng |
| Eupercaria/misc | Labridae | Cheilinus undulatus | native | Humphead wrasse | Lupaen |
| Eupercaria/misc | Labridae | Cheilio inermis | native | Cigar wrasse | Mameng |
| Kurtiformes | Apogonidae | Cheilodipterus alleni | native | Allen's cardinalfish | |
| Kurtiformes | Apogonidae | Cheilodipterus artus | native | Wolf cardinalfish | Kultit |
| Kurtiformes | Apogonidae | Cheilodipterus intermedius | native | Intermediate cardinalfish | |
| Kurtiformes | Apogonidae | Cheilodipterus isostigma | native | Dog-toothed cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Cheilodipterus macrodon | native | Large toothed cardinalfish | Kultit |
| Kurtiformes | Apogonidae | Cheilodipterus nigrotaeniatus | native | Dangat | |
| Kurtiformes | Apogonidae | Cheilodipterus quinquelineatus | native | Five-lined cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Cheilodipterus singapurensis | native | Truncate cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Cheilodipterus subulatus | native | ||
| Kurtiformes | Apogonidae | Cheilodipterus zonatus | native | Yellowbelly cardinalfish | Dangat |
| Ovalentaria/misc | Pomacentridae | Cheiloprion labiatus | native | Big-lip damsel | Palata |
| Perciformes/Serranoidei | Serranidae | Chelidoperca stella | native | Star-spotted perchlet | |
| Perciformes/Serranoidei | Serranidae | Chelidoperca tosaensis | native | Red-spot perchlet | |
| Acanthuriformes | Chaetodontidae | Chelmon rostratus | native | Copperband butterflyfish | Kalaykalay |
| Tetraodontiformes | Tetraodontidae | Chelonodontops patoca | native | Milkspotted puffer | Botite |
| Orectolobiformes | Hemiscylliidae | Chiloscyllium plagiosum | native | Whitespotted bambooshark | Pating |
| Orectolobiformes | Hemiscylliidae | Chiloscyllium punctatum | native | Brownbanded bambooshark | Pating |
| Clupeiformes | Chirocentridae | Chirocentrus dorab | native | Dorab wolf-herring | Balila |
| Eupercaria/misc | Scaridae | Chlorurus bleekeri | native | Bleeker's parrotfish | Isdang loro |
| Eupercaria/misc | Scaridae | Chlorurus bowersi | native | Bower's parrotfish | Isdang loro |
| Eupercaria/misc | Scaridae | Chlorurus capistratoides | native | Indian parrotfish | |
| Eupercaria/misc | Scaridae | Chlorurus frontalis | native | Pacific slopehead parrotfish | Loro |
| Eupercaria/misc | Scaridae | Chlorurus japanensis | native | Palecheek parrotfish | Loro |
| Eupercaria/misc | Scaridae | Chlorurus microrhinos | native | Steephead parrots | Isdang loro |
| Eupercaria/misc | Scaridae | Chlorurus oedema | native | Knothead parrotfish | Loro |
| Eupercaria/misc | Scaridae | Chlorurus spilurus | native | Pacific bullethead parrotfish | |
| Eupercaria/misc | Scaridae | Chlorurus troschelii | native | Troschel's parrotfish | Isdang loro |
| Eupercaria/misc | Labridae | Choerodon anchorago | native | Orange-dotted tuskfish | Mameng |
| Eupercaria/misc | Labridae | Choerodon azurio | native | Azurio tuskfish | |
| Eupercaria/misc | Labridae | Choerodon cephalotes | native | Purple tuskfish | Lupit |
| Eupercaria/misc | Labridae | Choerodon fasciatus | native | Harlequin tuskfish | |
| Eupercaria/misc | Labridae | Choerodon graphicus | native | Graphic tuskfish | |
| Eupercaria/misc | Labridae | Choerodon jordani | native | Jordan's tuskfish | Maming |
| Eupercaria/misc | Labridae | Choerodon melanostigma | native | ||
| Eupercaria/misc | Labridae | Choerodon oligacanthus | native | White-patch tuskfish | Arawas |
| Eupercaria/misc | Labridae | Choerodon robustus | native | Robust tuskfish | Maming |
| Eupercaria/misc | Labridae | Choerodon schoenleinii | native | Blackspot tuskfish | Mameng |
| Eupercaria/misc | Labridae | Choerodon zamboangae | native | Purple eyebrowed tuskfish | Mameng |
| Syngnathiformes | Syngnathidae | Choeroichthys brachysoma | native | Short-bodied pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Choeroichthys sculptus | native | Sculptured pipefish | |
| Perciformes/Serranoidei | Epinephelidae | Chromileptes altivelis | native | Humpback grouper | Lapu lapu |
| Ovalentaria/misc | Pomacentridae | Chromis alpha | native | Yellow-speckled chromis | |
| Ovalentaria/misc | Pomacentridae | Chromis analis | native | Yellow chromis | Palata |
| Ovalentaria/misc | Pomacentridae | Chromis atripectoralis | native | Black-axil chromis | Palata |
| Ovalentaria/misc | Pomacentridae | Chromis bowesi | native | Rhomboid Chromis | Rhomboid Chromis |
| Ovalentaria/misc | Pomacentridae | Chromis chrysura | native | Stout chromis | |
| Ovalentaria/misc | Pomacentridae | Chromis cinerascens | native | Green puller | Moong |
| Ovalentaria/misc | Pomacentridae | Chromis flavomaculata | native | Yellow-spotted chromis | |
| Ovalentaria/misc | Pomacentridae | Chromis gunting | native | Scissors Chromis | Scissors Chromis |
| Ovalentaria/misc | Pomacentridae | Chromis hangganan | native | Dark-margin Chromis | Dark-margin Chromis |
| Ovalentaria/misc | Pomacentridae | Chromis notata | native | Pearl-spot chromis | |
| Ovalentaria/misc | Pomacentridae | Chromis scotochiloptera | native | Philippines chromis | |
| Ovalentaria/misc | Pomacentridae | Chromis ternatensis | native | Ternate chromis | Palata |
| Ovalentaria/misc | Pomacentridae | Chromis viridis | native | Blue green damselfish | Palata |
| Ovalentaria/misc | Pomacentridae | Chromis weberi | native | Weber's chromis | Palata |
| Ovalentaria/misc | Pomacentridae | Chromis xanthochira | native | Yellow-axil chromis | |
| Ovalentaria/misc | Pomacentridae | Chromis xanthura | native | Paletail chromis | Palata |
| Ovalentaria/misc | Pomacentridae | Chromis yamakawai | native | Northern yellow-spotted Chromis | |
| Ovalentaria/misc | Pomacentridae | Chrysiptera biocellata | native | Twinspot damselfish | |
| Ovalentaria/misc | Pomacentridae | Chrysiptera bleekeri | native | Bleeker's damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Chrysiptera brownriggii | native | Surge damselfish | |
| Ovalentaria/misc | Pomacentridae | Chrysiptera caeruleolineata | native | Blueline demoiselle | |
| Ovalentaria/misc | Pomacentridae | Chrysiptera cyanea | native | Sapphire devil | Palata |
| Ovalentaria/misc | Pomacentridae | Chrysiptera glauca | native | Grey demoiselle | |
| Ovalentaria/misc | Pomacentridae | Chrysiptera oxycephala | native | Blue-spot demoiselle | Palata |
| Ovalentaria/misc | Pomacentridae | Chrysiptera parasema | native | Goldtail demoiselle | Palata |
| Ovalentaria/misc | Pomacentridae | Chrysiptera rollandi | native | Rolland's demoiselle | Palata |
| Ovalentaria/misc | Pomacentridae | Chrysiptera springeri | native | Springer's demoiselle | Palata |
| Ovalentaria/misc | Pomacentridae | Chrysiptera talboti | native | Talbot's demoiselle | Palata |
| Ovalentaria/misc | Pomacentridae | Chrysiptera traceyi | native | Tracey's demoiselle | |
| Ovalentaria/misc | Pomacentridae | Chrysiptera unimaculata | native | Onespot demoiselle | |
| Eupercaria/misc | Labridae | Cirrhilabrus briangreenei | native | Latigo fairy wrasse | Latigo fairy wrasse |
| Eupercaria/misc | Labridae | Cirrhilabrus brunneus | native | Dusky fairy-warsse | |
| Eupercaria/misc | Labridae | Cirrhilabrus cyanogularis | native | Blue-throated fairy-wrasse | |
| Eupercaria/misc | Labridae | Cirrhilabrus cyanopleura | native | Blueside wrasse | Lulukdayan |
| Eupercaria/misc | Labridae | Cirrhilabrus exquisitus | native | Exquisite wrasse | |
| Eupercaria/misc | Labridae | Cirrhilabrus flavidorsalis | native | Yellowfin fairy wrasse | |
| Eupercaria/misc | Labridae | Cirrhilabrus isosceles | native | Pintail fairy-wrasse | |
| Eupercaria/misc | Labridae | Cirrhilabrus lanceolatus | native | Long-tailed wrasse | |
| Eupercaria/misc | Labridae | Cirrhilabrus lubbocki | native | Lubbock's wrasse | |
| Eupercaria/misc | Labridae | Cirrhilabrus melanomarginatus | native | Blackfin fairy-warsse | |
| Eupercaria/misc | Labridae | Cirrhilabrus roseafascia | native | pink-banded fairy-warsse | |
| Eupercaria/misc | Labridae | Cirrhilabrus rubrimarginatus | native | Red-margined wrasse | |
| Eupercaria/misc | Labridae | Cirrhilabrus rubripinnis | native | Redfin wrasse | |
| Eupercaria/misc | Labridae | Cirrhilabrus ryukyuensis | native | ||
| Eupercaria/misc | Labridae | Cirrhilabrus shutmani | native | Magma fairy wrasse | Magma fairy-wrasse |
| Eupercaria/misc | Labridae | Cirrhilabrus temminckii | native | Threadfin wrasse | Lulukdayan |
| Centrarchiformes | Cirrhitidae | Cirrhitichthys aprinus | native | Spotted hawkfish | |
| Centrarchiformes | Cirrhitidae | Cirrhitichthys falco | native | Dwarf hawkfish | |
| Centrarchiformes | Cirrhitidae | Cirrhitichthys oxycephalus | native | Coral hawkfish | |
| Centrarchiformes | Cirrhitidae | Cirrhitops hubbardi | native | ||
| Centrarchiformes | Cirrhitidae | Cirrhitus pinnulatus | native | Stocky hawkfish | |
| Blenniiformes | Blenniidae | Cirripectes auritus | native | Blackflap blenny | |
| Blenniiformes | Blenniidae | Cirripectes castaneus | native | Chestnut eyelash-blenny | |
| Blenniiformes | Blenniidae | Cirripectes filamentosus | native | Filamentous blenny | |
| Blenniiformes | Blenniidae | Cirripectes fuscoguttatus | native | Spotted blenny | |
| Blenniiformes | Blenniidae | Cirripectes imitator | native | Imitator blenny | |
| Blenniiformes | Blenniidae | Cirripectes perustus | native | Flaming blenny | |
| Blenniiformes | Blenniidae | Cirripectes polyzona | native | ||
| Blenniiformes | Blenniidae | Cirripectes springeri | native | Springer's blenny | |
| Blenniiformes | Blenniidae | Cirripectes stigmaticus | native | Red-streaked blenny | |
| Blenniiformes | Blenniidae | Cirripectes variolosus | native | Red-speckled blenny | |
| Perciformes/Scorpaenoidei | Platycephalidae | Cociella crocodilus | native | Crocodile flathead | |
| Perciformes/Scorpaenoidei | Platycephalidae | Cociella punctata | native | Spotted flathead | |
| Perciformes/Scorpaenoidei | Aploactinidae | Cocotropus larvatus | native | Ghost velvetfish | |
| Anguilliformes | Congridae | Conger cinereus | native | Longfin African conger | Obud |
| Ovalentaria/misc | Pseudochromidae | Congrogadus subducens | native | Carpet eel-blenny | Batad |
| Acanthuriformes | Chaetodontidae | Coradion altivelis | native | Highfin coralfish | |
| Acanthuriformes | Chaetodontidae | Coradion chrysozonus | native | Goldengirdled coralfish | Kalaykalay |
| Acanthuriformes | Chaetodontidae | Coradion melanopus | native | Twospot coralfish | |
| Eupercaria/misc | Labridae | Coris aurilineata | native | Goldlined coris | |
| Eupercaria/misc | Labridae | Coris aygula | native | Clown coris | Maringyan |
| Eupercaria/misc | Labridae | Coris batuensis | native | Batu coris | Bankilan |
| Eupercaria/misc | Labridae | Coris dorsomacula | native | Pale-barred coris | |
| Eupercaria/misc | Labridae | Coris gaimard | native | African coris | Bankilan |
| Eupercaria/misc | Labridae | Coris pictoides | native | Blackstripe coris | |
| Syngnathiformes | Syngnathidae | Corythoichthys amplexus | native | Brown-banded pipefish | |
| Syngnathiformes | Syngnathidae | Corythoichthys flavofasciatus | native | Network pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Corythoichthys haematopterus | native | Messmate pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Corythoichthys intestinalis | native | Scribbled pipefish | Bukaya bukaya |
| Syngnathiformes | Syngnathidae | Corythoichthys nigripectus | native | Black-breasted pipefish | |
| Syngnathiformes | Syngnathidae | Corythoichthys ocellatus | native | Ocellated pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Corythoichthys polynotatus | native | Many-spotted pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Corythoichthys schultzi | native | Schultz's pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Cosmocampus banneri | native | Roughridge pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Cosmocampus maxweberi | native | Maxweber's pipefish | Dagum-dagum |
| Carangiformes | Carangidae | Craterognathus plagiotaenia | native | Barcheek trevally | Salamin |
| Mugiliformes | Mugilidae | Crenimugil crenilabis | native | Fringelip mullet | Agwas |
| Mugiliformes | Mugilidae | Crenimugil seheli | native | Bluespot mullet | Talilong |
| Blenniiformes | Blenniidae | Crossosalarias macrospilus | native | Tripplespot blenny | |
| Gobiiformes | Gobiidae | Cryptocentroides insignis | native | Insignia prawn-goby | Bia |
| Gobiiformes | Gobiidae | Cryptocentrus albidorsus | native | White-backed shrimpgoby | |
| Gobiiformes | Gobiidae | Cryptocentrus caeruleomaculatus | native | Blue-speckled prawn-goby | |
| Gobiiformes | Gobiidae | Cryptocentrus cinctus | native | Yellow prawn-goby | Bia |
| Gobiiformes | Gobiidae | Cryptocentrus cyanospilotus | native | Bluespot shrimpgoby | |
| Gobiiformes | Gobiidae | Cryptocentrus fasciatus | native | Y-bar shrimp goby | |
| Gobiiformes | Gobiidae | Cryptocentrus inexplicatus | native | Inexplicable shrimpgoby | |
| Gobiiformes | Gobiidae | Cryptocentrus leptocephalus | native | Pink-speckled shrimpgoby | |
| Gobiiformes | Gobiidae | Cryptocentrus leucostictus | native | Saddled prawn-goby | Bia |
| Gobiiformes | Gobiidae | Cryptocentrus maudae | native | Maude's shrimpgoby | |
| Gobiiformes | Gobiidae | Cryptocentrus nigrocellatus | native | Blackspot shrimpgoby | |
| Gobiiformes | Gobiidae | Cryptocentrus strigilliceps | native | Target shrimp goby | Bia |
| Acanthuriformes | Acanthuridae | Ctenochaetus binotatus | native | Twospot surgeonfish | Labahita |
| Acanthuriformes | Acanthuridae | Ctenochaetus cyanocheilus | native | Short-tail bristle-tooth | |
| Acanthuriformes | Acanthuridae | Ctenochaetus striatus | native | Striated surgeonfish | Mangangadlit |
| Acanthuriformes | Acanthuridae | Ctenochaetus tominiensis | native | Tomini surgeonfish | Labahita |
| Gobiiformes | Gobiidae | Ctenogobiops aurocingulus | native | Gold-streaked prawn-goby | Bia |
| Gobiiformes | Gobiidae | Ctenogobiops crocineus | native | ||
| Gobiiformes | Gobiidae | Ctenogobiops feroculus | native | Sandy prawn-goby | Paku |
| Gobiiformes | Gobiidae | Ctenogobiops formosa | native | ||
| Gobiiformes | Gobiidae | Ctenogobiops pomastictus | native | Gold-specked prawn-goby | Bia |
| Gobiiformes | Gobiidae | Ctenogobiops tangaroai | native | Tangaroa shrimpgoby | Bia |
| Tetraodontiformes | Diodontidae | Cyclichthys orbicularis | native | Birdbeak burrfish | Botiting laot |
| Tetraodontiformes | Diodontidae | Cyclichthys spilostylus | native | Spotbase burrfish | Butete |
| Perciformes/Scorpaenoidei | Platycephalidae | Cymbacephalus beauforti | native | Crocodile fish | |
| Perciformes/Scorpaenoidei | Platycephalidae | Cymbacephalus bosschei | native | Small-eyed flathead | |
| Eupercaria/misc | Labridae | Cymolutes praetextatus | native | Knife razorfish | Ipus-ipus |
| Eupercaria/misc | Labridae | Cymolutes torquatus | native | Finescale razorfish | |
| Ovalentaria/misc | Pseudochromidae | Cypho zaps | native | Checkered dottyback | Checkered dottyback |
| Centrarchiformes | Cirrhitidae | Cyprinocirrhites polyactis | native | Swallowtail hawkfish | |
| Dactylopteriformes | Dactylopteridae | Dactyloptena orientalis | native | Oriental flying gurnard | Balongon |
| Callionymiformes | Callionymidae | Dactylopus dactylopus | native | Fingered dragonet | |
| Ovalentaria/misc | Pomacentridae | Dascyllus aruanus | native | Whitetail dascyllus | Kikiringan |
| Ovalentaria/misc | Pomacentridae | Dascyllus melanurus | native | Blacktail humbug | Kikiringan |
| Ovalentaria/misc | Pomacentridae | Dascyllus reticulatus | native | Reticulate dascyllus | Baro-baro |
| Ovalentaria/misc | Pomacentridae | Dascyllus trimaculatus | native | Threespot dascyllus | Palata |
| Carangiformes | Carangidae | Decapterus kurroides | native | Redtail scad | Budboron |
| Carangiformes | Carangidae | Decapterus macrosoma | native | Shortfin scad | Budboron |
| Carangiformes | Carangidae | Decapterus maruadsi | native | Japanese scad | Galunggong |
| Perciformes/Scorpaenoidei | Scorpaenidae | Dendrochirus biocellatus | native | Twospot turkeyfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Dendrochirus brachypterus | native | Dwarf lionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Dendrochirus zebra | native | Zebra turkeyfish | Danuy ranuy |
| Gobiesociformes | Gobiesocidae | Diademichthys lineatus | native | ||
| Eupercaria/misc | Haemulidae | Diagramma pictum | native | Painted sweetlips | Bakoko |
| Ophidiiformes | Dinematichthyidae | Diancistrus erythraeus | native | Red viviparous brotula | |
| Ophidiiformes | Dinematichthyidae | Diancistrus fuscus | native | Dusky brotulid | |
| Ophidiiformes | Dinematichthyidae | Diancistrus machidai | native | Machida's coralbrotula | Machida's coralbrotula |
| Ophidiiformes | Dinematichthyidae | Diancistrus springeri | native | Springer's coralbrotula | |
| Ophidiiformes | Dinematichthyidae | Dinematichthys iluocoeteoides | native | Yellow pigmy brotula | |
| Tetraodontiformes | Diodontidae | Diodon holocanthus | native | Longspined porcupinefish | Botiting laot |
| Tetraodontiformes | Diodontidae | Diodon hystrix | native | Spot-fin porcupinefish | Botiting laot |
| Tetraodontiformes | Diodontidae | Diodon liturosus | native | Black-blotched porcupinefish | Botiting laot |
| Callionymiformes | Callionymidae | Diplogrammus goramensis | native | Goram dragonet | |
| Perciformes/Serranoidei | Liopropomatidae | Diploprion bifasciatum | native | Barred soapfish | Lapu-lapu |
| Eupercaria/misc | Labridae | Diproctacanthus xanthurus | native | Yellowtail tubelip | Lulukdayan |
| Eupercaria/misc | Caesionidae | Dipterygonotus balteatus | native | Mottled fusilier | Dalagang bukid |
| Ovalentaria/misc | Pomacentridae | Dischistodus chrysopoecilus | native | White-spot damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Dischistodus fasciatus | native | Banded damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Dischistodus melanotus | native | Black-vent damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Dischistodus perspicillatus | native | White damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Dischistodus prosopotaenia | native | Honey-head damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Dischistodus pseudochrysopoecilus | native | Monarch damsel | Palata |
| Gobiiformes | Gobiidae | Discordipinna griessingeri | native | Spikefin goby | Bia |
| Gobiesociformes | Gobiesocidae | Discotrema crinophilum | native | Crinoid clingfish | |
| Gobiesociformes | Gobiesocidae | Discotrema monogrammum | native | Oneline clingfish | |
| Syngnathiformes | Syngnathidae | Doryrhamphus excisus | native | Bluestripe pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Doryrhamphus janssi | native | Janss' pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Doryrhamphus japonicus | native | Honshu pipefish | |
| Syngnathiformes | Syngnathidae | Doryrhamphus negrosensis | native | Negros pipefish | Dagum-dagum |
| Acanthuriformes | Drepaneidae | Drepane longimana | native | Concertina fish | Mayang |
| Acanthuriformes | Drepaneidae | Drepane punctata | native | Spotted sicklefish | Bayang |
| Syngnathiformes | Syngnathidae | Dunckerocampus dactyliophorus | native | Ringed pipefish | Kabayokabayoh |
| Carangiformes | Echeneidae | Echeneis naucrates | native | Live sharksucker | Parikit banca |
| Anguilliformes | Muraenidae | Echidna delicatula | native | Mottled moray | |
| Anguilliformes | Muraenidae | Echidna leucotaenia | native | Whiteface moray | |
| Anguilliformes | Muraenidae | Echidna nebulosa | native | Starry moray | Igat |
| Anguilliformes | Muraenidae | Echidna polyzona | native | Barred moray | Payangitan |
| Anguilliformes | Muraenidae | Echidna unicolor | native | Unicolor moray | |
| Blenniiformes | Blenniidae | Ecsenius bicolor | native | Bicolor blenny | |
| Blenniiformes | Blenniidae | Ecsenius bimaculatus | native | Twinspot coralblenny | |
| Blenniiformes | Blenniidae | Ecsenius dilemma | endemic | Twocoat coralblenny | Twocoat coralblenny |
| Blenniiformes | Blenniidae | Ecsenius kurti | endemic | Kurt's coralblenny | Kurt's coralblenny |
| Blenniiformes | Blenniidae | Ecsenius lineatus | native | Linear blenny | |
| Blenniiformes | Blenniidae | Ecsenius lividanalis | native | Blackspot coralblenny | |
| Blenniiformes | Blenniidae | Ecsenius melarchus | native | Yellow-eyed comb-tooth | |
| Blenniiformes | Blenniidae | Ecsenius midas | native | Persian blenny | |
| Blenniiformes | Blenniidae | Ecsenius monoculus | native | Monocle coralblenny | |
| Blenniiformes | Blenniidae | Ecsenius namiyei | native | Black comb-tooth | |
| Blenniiformes | Blenniidae | Ecsenius oculus | native | Ocular blenny | |
| Blenniiformes | Blenniidae | Ecsenius opsifrontalis | native | Comical blenny | |
| Blenniiformes | Blenniidae | Ecsenius pictus | native | White-lined comb-tooth | |
| Blenniiformes | Blenniidae | Ecsenius stigmatura | native | Tailspot coralblenny | |
| Blenniiformes | Blenniidae | Ecsenius yaeyamaensis | native | Yaeyama blenny | Talingkuk |
| Carangiformes | Carangidae | Elagatis bipinnulata | native | Rainbow runner | Balilito |
| Mugiliformes | Mugilidae | Ellochelon vaigiensis | native | Squaretail mullet | Bunti |
| Ophidiiformes | Bythitidae | Ematops randalli | native | Randall's viviparous brotula | |
| Ophidiiformes | Carapidae | Encheliophis gracilis | native | Graceful pearlfish | |
| Ophidiiformes | Carapidae | Encheliophis homei | native | Silver pearlfish | |
| Ophidiiformes | Carapidae | Encheliophis vermicularis | native | Worm pearlfish | |
| Anguilliformes | Muraenidae | Enchelycore bayeri | native | Bayer's moray | |
| Anguilliformes | Muraenidae | Enchelycore schismatorhynchus | native | White-margined moray | |
| Blenniiformes | Blenniidae | Enchelyurus kraussii | native | Krauss' blenny | |
| Clupeiformes | Engraulidae | Encrasicholina devisi | native | Devis' anchovy | |
| Clupeiformes | Engraulidae | Encrasicholina heteroloba | native | Shorthead anchovy | Bolinao na itim |
| Clupeiformes | Engraulidae | Encrasicholina punctifer | native | Buccaneer anchovy | Bulinao |
| Pleuronectiformes | Bothidae | Engyprosopon grandisquama | native | Largescale flounder | Palad |
| Blenniiformes | Tripterygiidae | Enneapterygius bahasa | native | Blacktail threefin | |
| Blenniiformes | Tripterygiidae | Enneapterygius fasciatus | native | Banded triplefin | |
| Blenniiformes | Tripterygiidae | Enneapterygius flavoccipitis | native | Yellownape tripplefin | |
| Blenniiformes | Tripterygiidae | Enneapterygius fuscoventer | native | Blackbelly triplefin | Blackbelly triplefin |
| Blenniiformes | Tripterygiidae | Enneapterygius hemimelas | native | Halfblack Triplefin | |
| Blenniiformes | Tripterygiidae | Enneapterygius minutus | native | ||
| Blenniiformes | Tripterygiidae | Enneapterygius pallidoserialis | native | Pale white-spotted triplefin | Pale white-spotted triplefin |
| Blenniiformes | Tripterygiidae | Enneapterygius philippinus | native | Minute triplefin | Philippines triplefin |
| Blenniiformes | Tripterygiidae | Enneapterygius similis | native | Black-and-Red Triplefin | Blacktail triplefin |
| Blenniiformes | Tripterygiidae | Enneapterygius tutuilae | native | High-hat Triplefin | |
| Blenniiformes | Tripterygiidae | Enneapterygius ziegleri | native | Ziegler's triplefin | |
| Blenniiformes | Blenniidae | Entomacrodus caudofasciatus | native | Tail-barred rockskipper | |
| Blenniiformes | Blenniidae | Entomacrodus decussatus | native | Wavy-lined blenny | |
| Blenniiformes | Blenniidae | Entomacrodus striatus | native | Reef margin blenny | |
| Blenniiformes | Blenniidae | Entomacrodus thalassinus | native | Sea blenny | |
| Acanthuriformes | Ephippidae | Ephippus orbis | native | Orbfish | |
| Eupercaria/misc | Labridae | Epibulus brevis | native | Latent slingjaw wrasse | |
| Eupercaria/misc | Labridae | Epibulus insidiator | native | Sling-jaw wrasse | Bungat |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus amblycephalus | native | Banded grouper | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus areolatus | native | Areolate grouper | Talbusan |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus awoara | native | Yellow grouper | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus bontoides | native | Palemargin grouper | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus bruneus | native | Longtooth grouper | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus coeruleopunctatus | native | Whitespotted grouper | Lapu lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus coioides | native | Orange-spotted grouper | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus corallicola | native | Coral grouper | Lapu lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus cyanopodus | native | Speckled blue grouper | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus fasciatomaculosus | native | Rock grouper | Lapu lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus fasciatus | native | Blacktip grouper | Barangbang |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus fuscoguttatus | native | Brown-marbled grouper | Kigting |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus hexagonatus | native | Starspotted grouper | Lapu lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus kupangensis | native | Fivebar grouper | Fivebar grouper |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus lanceolatus | native | Giant grouper | Puol |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus macrospilos | native | Snubnose grouper | Lapu lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus maculatus | native | Highfin grouper | Lapu lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus magniscuttis | native | Speckled grouper | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus malabaricus | native | Malabar grouper | Lapu lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus melanostigma | native | One-blotch grouper | Lapu lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus merra | native | Honeycomb grouper | Baraka |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus morrhua | native | Comet grouper | Kulapo |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus ongus | native | White-streaked grouper | Buklak |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus polyphekadion | native | Camouflage grouper | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus quoyanus | native | Longfin grouper | Lapu lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus rivulatus | native | Halfmoon grouper | Lapu lapu |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus sexfasciatus | native | Sixbar grouper | Bokbok |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus tauvina | native | Greasy grouper | Tiny |
| Perciformes/Serranoidei | Epinephelidae | Epinephelus undulosus | native | Wavy-lined grouper | Lapu lapu |
| Perciformes/Scorpaenoidei | Synanceiidae | Erosa erosa | native | Pitted stonefish | |
| Eupercaria/misc | Lutjanidae | Etelis coruscans | native | Deepwater longtail red snapper | Maya maya |
| Gobiiformes | Gobiidae | Eviota asymbasia | native | Inconsistent dwarfgoby | |
| Gobiiformes | Gobiidae | Eviota atriventris | native | Blackbelly dwarfgoby | Kultit |
| Gobiiformes | Gobiidae | Eviota bifasciata | native | Twostripe dwarfgoby | Bia |
| Gobiiformes | Gobiidae | Eviota bipunctata | native | Variable dwarfgoby | |
| Gobiiformes | Gobiidae | Eviota fallax | native | Twin Dwarfgoby | |
| Gobiiformes | Gobiidae | Eviota jewettae | native | Jewett’s dwarfgoby | |
| Gobiiformes | Gobiidae | Eviota latifasciata | native | Brownbanded dwarfgoby | |
| Gobiiformes | Gobiidae | Eviota longirostris | native | Long-snout dwarfgoby | |
| Gobiiformes | Gobiidae | Eviota melasma | native | Headspot dwarfgoby | Bia |
| Gobiiformes | Gobiidae | Eviota nebulosa | native | Nebulous dwarfgoby | |
| Gobiiformes | Gobiidae | Eviota nigramembrana | native | Blackbar dwarfgoby | |
| Gobiiformes | Gobiidae | Eviota prasina | native | Greenbubble dwarfgoby | Bia |
| Gobiiformes | Gobiidae | Eviota prasites | native | Hairfin dwarfgoby | |
| Gobiiformes | Gobiidae | Eviota queenslandica | native | Queensland dwarfgoby | Bia |
| Gobiiformes | Gobiidae | Eviota rubrisparsa | native | Redspeckled dwarfgoby | |
| Gobiiformes | Gobiidae | Eviota sebreei | native | Sebree's dwarfgoby | Bia |
| Gobiiformes | Gobiidae | Eviota shimadai | native | Shimadai's dwarfgoby | |
| Gobiiformes | Gobiidae | Eviota smaragdus | native | Emerald dwarfgoby | |
| Gobiiformes | Gobiidae | Eviota sparsa | native | Speckled dwarfgoby | Bia |
| Gobiiformes | Gobiidae | Eviota storthynx | native | Storthynx dwarfgoby | Bia |
| Gobiiformes | Gobiidae | Eviota zonura | native | Zoned dwarfgoby | |
| Eupercaria/misc | Sparidae | Evynnis cardinalis | native | Threadfin porgy | Bakoko |
| Blenniiformes | Blenniidae | Exallias brevis | native | Leopard blenny | |
| Gobiiformes | Gobiidae | Exyrias akihito | native | Akihito's goby | |
| Gobiiformes | Gobiidae | Exyrias belissimus | native | Mud reef-goby | Bia |
| Gobiiformes | Gobiidae | Exyrias ferrarisi | native | Ferraris' goby | Bia |
| Gobiiformes | Gobiidae | Exyrias puntang | native | Puntang goby | Bia |
| Carangiformes | Carangidae | Ferdauia ferdau | native | Blue trevally | Sibo |
| Carangiformes | Carangidae | Ferdauia orthogrammus | native | Island trevally | Gumagatos |
| Syngnathiformes | Syngnathidae | Festucalex erythraeus | native | Dagum-dagum | |
| Kurtiformes | Apogonidae | Fibramia amboinensis | native | Amboina cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Fibramia lateralis | native | Humpback cardinal | Dangat |
| Kurtiformes | Apogonidae | Fibramia thermalis | native | Half-barred cardinal | Dangat |
| Syngnathiformes | Fistulariidae | Fistularia commersonii | native | Bluespotted cornetfish | Kilukilu |
| Syngnathiformes | Fistulariidae | Fistularia petimba | native | Red cornetfish | Trompeta |
| Gobiesociformes | Gobiesocidae | Flabellicauda alleni | native | Allen's clingfish | |
| Carangiformes | Carangidae | Flavocaranx bajad | native | Orangespotted trevally | Pampano |
| Kurtiformes | Apogonidae | Foa fo | native | Weedy cardinalfish | |
| Acanthuriformes | Chaetodontidae | Forcipiger flavissimus | native | Longnose butterfly fish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Forcipiger longirostris | native | Longnose butterflyfish | Paru-paro |
| Kurtiformes | Apogonidae | Fowleria aurita | native | Crosseyed cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Fowleria flammea | native | ||
| Kurtiformes | Apogonidae | Fowleria isostigma | native | Dotted cardinalfish | |
| Kurtiformes | Apogonidae | Fowleria marmorata | native | Marbled cardinalfish | Suga |
| Kurtiformes | Apogonidae | Fowleria vaiulae | native | Mottled cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Fowleria variegata | native | Variegated cardinalfish | Dangat |
| Lophiiformes | Antennariidae | Fowlerichthys scriptissimus | native | ||
| Gobiiformes | Gobiidae | Fusigobius duospilus | native | Barenape goby | |
| Gobiiformes | Gobiidae | Fusigobius neophytus | native | Common fusegoby | Bia |
| Gobiiformes | Gobiidae | Fusigobius signipinnis | native | Signalfin goby | Bia |
| Acanthuriformes | Leiognathidae | Gazza achlamys | native | Smalltoothed ponyfish | Tambong |
| Acanthuriformes | Pomacanthidae | Genicanthus bellus | native | Ornate angelfish | Boray-boray |
| Acanthuriformes | Pomacanthidae | Genicanthus lamarck | native | Blackstriped angelfish | Baro-baro |
| Acanthuriformes | Pomacanthidae | Genicanthus melanospilos | native | Spotbreast angelfish | |
| Acanthuriformes | Pomacanthidae | Genicanthus semifasciatus | native | Japanese swallow | |
| Acanthuriformes | Pomacanthidae | Genicanthus watanabei | native | Blackedged angelfish | |
| Eupercaria/misc | Gerreidae | Gerres erythrourus | native | Deep-bodied mojarra | Malacapas |
| Eupercaria/misc | Gerreidae | Gerres longirostris | native | Strongspine silver-biddy | Malakapas |
| Eupercaria/misc | Gerreidae | Gerres oblongus | native | Slender silver-biddy | Malakapas |
| Eupercaria/misc | Gerreidae | Gerres oyena | native | Common silver-biddy | Lamas |
| Centrarchiformes | Girellidae | Girella punctata | native | Largescale blackfish | |
| Gobiiformes | Gobiidae | Gladiogobius ensifer | native | Gladiator goby | |
| Blenniiformes | Blenniidae | Glyptoparus delicatulus | native | Delicate blenny | |
| Carangiformes | Carangidae | Gnathanodon speciosus | native | Golden trevally | Banlog |
| Eupercaria/misc | Lethrinidae | Gnathodentex aureolineatus | native | Striped large-eye bream | Bitilya |
| Gobiiformes | Gobiidae | Gnatholepis anjerensis | native | Eye-bar goby | |
| Gobiiformes | Gobiidae | Gnatholepis cauerensis | native | Eyebar goby | Bia |
| Gobiiformes | Gobiidae | Gnatholepis ophthalmotaenia | native | ||
| Gobiiformes | Gobiidae | Gobiodon citrinus | native | Poison goby | Bia |
| Gobiiformes | Gobiidae | Gobiodon fulvus | native | ||
| Gobiiformes | Gobiidae | Gobiodon heterospilos | native | Head and tailspotted coralgoby | |
| Gobiiformes | Gobiidae | Gobiodon histrio | native | Broad-barred goby | Bia |
| Gobiiformes | Gobiidae | Gobiodon okinawae | native | Okinawa goby | Bia |
| Gobiiformes | Gobiidae | Gobiodon quinquestrigatus | native | Five-lined coral goby | Bia |
| Gobiiformes | Gobiidae | Gobiopsis bravoi | native | Bravo's bearded goby | Bia |
| Eupercaria/misc | Labridae | Gomphosus caeruleus | native | Green birdmouth wrasse | |
| Eupercaria/misc | Labridae | Gomphosus varius | native | Bird wrasse | Bankilan |
| Anguilliformes | Congridae | Gorgasia maculata | native | Whitespotted garden eel | |
| Anguilliformes | Congridae | Gorgasia preclara | native | Splendid garden eel | |
| Perciformes/Serranoidei | Epinephelidae | Gracila albomarginata | native | Masked grouper | Lapu-lapu |
| Gobiiformes | Gobiidae | Grallenia rubrilineata | native | Redstripe goby | Redstripe goby |
| Scombriformes | Scombridae | Grammatorcynus bilineatus | native | Double-lined mackerel | Alumahang bato |
| Perciformes/Serranoidei | Grammistidae | Grammistes sexlineatus | native | Goldenstriped soapfish | |
| Perciformes/Serranoidei | Grammistidae | Grammistops ocellatus | native | Ocellate soapfish | |
| Gobiiformes | Microdesmidae | Gunnellichthys curiosus | native | Curious wormfish | |
| Gobiiformes | Microdesmidae | Gunnellichthys pleurotaenia | native | Onestripe wormfish | |
| Gobiiformes | Microdesmidae | Gunnellichthys viridescens | native | Yellowstripe wormfish | |
| Kurtiformes | Apogonidae | Gymnapogon philippinus | native | Philippine cardinalfish | Dangat |
| Eupercaria/misc | Caesionidae | Gymnocaesio gymnoptera | native | Slender fusilier | Dalagang bukid |
| Eupercaria/misc | Lethrinidae | Gymnocranius euanus | native | Japanese large-eye bream | |
| Eupercaria/misc | Lethrinidae | Gymnocranius frenatus | native | Yellowsnout large-eye bream | Porgy |
| Eupercaria/misc | Lethrinidae | Gymnocranius grandoculis | native | Blue-lined large-eye bream | Bitilya |
| Eupercaria/misc | Lethrinidae | Gymnocranius griseus | native | Grey large-eye bream | Porgy |
| Eupercaria/misc | Lethrinidae | Gymnocranius microdon | native | Blue-spotted large-eye bream | Bukawing gulat |
| Anguilliformes | Muraenidae | Gymnomuraena zebra | native | Zebra moray | Malibanos |
| Scombriformes | Scombridae | Gymnosarda unicolor | native | Dogtooth tuna | Tambakol |
| Anguilliformes | Muraenidae | Gymnothorax buroensis | native | Vagrant moray | Malibanos |
| Anguilliformes | Muraenidae | Gymnothorax castlei | native | Castle's moray | |
| Anguilliformes | Muraenidae | Gymnothorax chilospilus | native | Lipspot moray | Malibanos |
| Anguilliformes | Muraenidae | Gymnothorax chlamydatus | native | Banded mud moray | |
| Anguilliformes | Muraenidae | Gymnothorax enigmaticus | native | Enigmatic moray | Malibanos |
| Anguilliformes | Muraenidae | Gymnothorax favagineus | native | Laced moray | Malibanos |
| Anguilliformes | Muraenidae | Gymnothorax fimbriatus | native | Fimbriated moray | Malibanos |
| Anguilliformes | Muraenidae | Gymnothorax flavimarginatus | native | Yellow-edged moray | Malibanos |
| Anguilliformes | Muraenidae | Gymnothorax fuscomaculatus | native | Brown spotted moray | |
| Anguilliformes | Muraenidae | Gymnothorax javanicus | native | Giant moray | Almang |
| Anguilliformes | Muraenidae | Gymnothorax kidako | native | Kidako moray | |
| Anguilliformes | Muraenidae | Gymnothorax margaritophorus | native | Blotch-necked moray | Malibanos |
| Anguilliformes | Muraenidae | Gymnothorax melatremus | native | Dwarf moray | Payangitan |
| Anguilliformes | Muraenidae | Gymnothorax meleagris | native | Turkey moray | Malibanos |
| Anguilliformes | Muraenidae | Gymnothorax monochrous | native | Drab moray | Bakasi |
| Anguilliformes | Muraenidae | Gymnothorax monostigma | native | One-spot moray | |
| Anguilliformes | Muraenidae | Gymnothorax pictus | native | Paintspotted moray | Berkakan |
| Anguilliformes | Muraenidae | Gymnothorax pseudothyrsoideus | native | Highfin moray | Malibanos |
| Anguilliformes | Muraenidae | Gymnothorax punctatofasciatus | native | Bars'n spots moray | Panagitan |
| Anguilliformes | Muraenidae | Gymnothorax reevesii | native | Reeve's moray | |
| Anguilliformes | Muraenidae | Gymnothorax richardsonii | native | Richardson's moray | Malibanos |
| Anguilliformes | Muraenidae | Gymnothorax robinsi | native | Robins' moray | |
| Anguilliformes | Muraenidae | Gymnothorax rueppelliae | native | Banded moray | Malibanos |
| Anguilliformes | Muraenidae | Gymnothorax thyrsoideus | native | Greyface moray | Malibanos |
| Anguilliformes | Muraenidae | Gymnothorax undulatus | native | Undulated moray | Bakasi |
| Anguilliformes | Muraenidae | Gymnothorax zonipectis | native | Barredfin moray | Ahas-dagat |
| Myliobatiformes | Gymnuridae | Gymnura zonura | native | Zonetail butterfly ray | |
| Syngnathiformes | Syngnathidae | Halicampus brocki | native | Brock's pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Halicampus dunckeri | native | Duncker's pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Halicampus grayi | native | Gray's pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Halicampus macrorhynchus | native | Ornate pipefish | |
| Syngnathiformes | Syngnathidae | Halicampus mataafae | native | Samoan pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Halicampus nitidus | native | Glittering pipefish | Dagum-dagum |
| Eupercaria/misc | Labridae | Halichoeres argus | native | Argus wrasse | Mameng |
| Eupercaria/misc | Labridae | Halichoeres bicolor | native | Pearly-spotted wrasse | |
| Eupercaria/misc | Labridae | Halichoeres binotopsis | native | Saowisata wrasse | Labayan |
| Eupercaria/misc | Labridae | Halichoeres biocellatus | native | Red-lined wrasse | Lubayan |
| Eupercaria/misc | Labridae | Halichoeres chlorocephalus | native | Greenhead wrasse | |
| Eupercaria/misc | Labridae | Halichoeres chloropterus | native | Pastel-green wrasse | Lulukdayan |
| Eupercaria/misc | Labridae | Halichoeres chrysus | native | Canary wrasse | Bankilan |
| Eupercaria/misc | Labridae | Halichoeres hartzfeldii | native | Hartzfeld's wrasse | Lulukdayan |
| Eupercaria/misc | Labridae | Halichoeres hilomeni | native | Hilomen's wrasse | |
| Eupercaria/misc | Labridae | Halichoeres hortulanus | native | Checkerboard wrasse | Labayan |
| Eupercaria/misc | Labridae | Halichoeres kallochroma | native | ||
| Eupercaria/misc | Labridae | Halichoeres kneri | native | Kner's wrasse | |
| Eupercaria/misc | Labridae | Halichoeres leucurus | native | Greyhead wrasse | Labayan |
| Eupercaria/misc | Labridae | Halichoeres margaritaceus | native | Pink-belly wrasse | Bankilan |
| Eupercaria/misc | Labridae | Halichoeres marginatus | native | Dusky wrasse | Labayan |
| Eupercaria/misc | Labridae | Halichoeres melanochir | native | Orangefin wrasse | Lulukdayan |
| Eupercaria/misc | Labridae | Halichoeres melanurus | native | Tail-spot wrasse | Lulukdayan |
| Eupercaria/misc | Labridae | Halichoeres melasmapomus | native | Cheekspot wrasse | |
| Eupercaria/misc | Labridae | Halichoeres miniatus | native | Circle-cheek wrasse | Mameng |
| Eupercaria/misc | Labridae | Halichoeres nebulosus | native | Nebulous wrasse | Lulukdayan |
| Eupercaria/misc | Labridae | Halichoeres nigrescens | native | Bubblefin wrasse | Lulukdayan |
| Eupercaria/misc | Labridae | Halichoeres ornatissimus | native | Ornamented wrasse | |
| Eupercaria/misc | Labridae | Halichoeres pallidus | native | Pale wrasse | |
| Eupercaria/misc | Labridae | Halichoeres papilionaceus | native | Weed wrasse | |
| Eupercaria/misc | Labridae | Halichoeres podostigma | native | Axil spot wrasse | Mameng |
| Eupercaria/misc | Labridae | Halichoeres prosopeion | native | Twotone wrasse | Buyos |
| Eupercaria/misc | Labridae | Halichoeres richmondi | native | Richmond's wrasse | Labayan |
| Eupercaria/misc | Labridae | Halichoeres scapularis | native | Zigzag wrasse | Labayan |
| Eupercaria/misc | Labridae | Halichoeres solorensis | native | Green wrasse | Labayan |
| Eupercaria/misc | Labridae | Halichoeres timorensis | native | Timor wrasse | |
| Eupercaria/misc | Labridae | Halichoeres trimaculatus | native | Threespot wrasse | Labayan |
| Eupercaria/misc | Labridae | Halichoeres zeylonicus | native | Goldstripe wrasse | Labayan lawod |
| Blenniiformes | Tripterygiidae | Helcogramma chica | native | Little hooded triplefin | |
| Blenniiformes | Tripterygiidae | Helcogramma fuscopinna | native | Blackfin triplefin | |
| Blenniiformes | Tripterygiidae | Helcogramma springeri | native | Springer's triplefin | |
| Blenniiformes | Tripterygiidae | Helcogramma striata | native | Tropical striped triplefin | |
| Blenniiformes | Tripterygiidae | Helcogramma trigloides | native | Scarf triplefin | |
| Ovalentaria/misc | Pomacentridae | Hemiglyphidodon plagiometopon | native | Lagoon damselfish | Palata |
| Eupercaria/misc | Labridae | Hemigymnus fasciatus | native | Barred thicklip | Bankilan |
| Eupercaria/misc | Labridae | Hemigymnus melapterus | native | Blackeye thicklip | Bankilan |
| Beloniformes | Hemiramphidae | Hemiramphus archipelagicus | native | Jumping halfbeak | Buging |
| Beloniformes | Hemiramphidae | Hemiramphus far | native | Black-barred halfbeak | Bugiw |
| Beloniformes | Hemiramphidae | Hemiramphus lutkei | native | Lutke's halfbeak | Buging |
| Acanthuriformes | Chaetodontidae | Hemitaurichthys polylepis | native | Pyramid butterflyfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Heniochus acuminatus | native | Pennant coralfish | Kalaykalay |
| Acanthuriformes | Chaetodontidae | Heniochus chrysostomus | native | Threeband pennantfish | Layaglayag |
| Acanthuriformes | Chaetodontidae | Heniochus diphreutes | native | False moorish idol | Dalang bukid |
| Acanthuriformes | Chaetodontidae | Heniochus monoceros | native | Masked bannerfish | Paru-paro |
| Acanthuriformes | Chaetodontidae | Heniochus singularius | native | Singular bannerfish | Kalaykalay |
| Acanthuriformes | Chaetodontidae | Heniochus varius | native | Horned bannerfish | Layaglayag |
| Clupeiformes | Dorosomatidae | Herklotsichthys quadrimaculatus | native | Bluestripe herring | Tunsoy |
| Anguilliformes | Congridae | Heteroconger hassi | native | Spotted garden-eel | |
| Anguilliformes | Congridae | Heteroconger mercyae | native | Mercy's garden eel | |
| Heterodontiformes | Heterodontidae | Heterodontus zebra | native | Zebra bullhead shark | Pating |
| Eupercaria/misc | Priacanthidae | Heteropriacanthus cruentatus | native | Glasseye | Siga |
| Myliobatiformes | Dasyatidae | Himantura uarnak | native | Honeycomb stingray | Pagi |
| Syngnathiformes | Syngnathidae | Hippocampus barbouri | native | Barbour's seahorse | |
| Syngnathiformes | Syngnathidae | Hippocampus bargibanti | native | Pygmy seahorse | |
| Syngnathiformes | Syngnathidae | Hippocampus comes | native | Tiger tail seahorse | |
| Syngnathiformes | Syngnathidae | Hippocampus denise | native | Denise's pygmy seahorse | |
| Syngnathiformes | Syngnathidae | Hippocampus histrix | native | Thorny seahorse | Kabayo-kabayohan |
| Syngnathiformes | Syngnathidae | Hippocampus kuda | native | Spotted seahorse | Kabayo-kabayohan |
| Syngnathiformes | Syngnathidae | Hippocampus spinosissimus | native | Hedgehog seahorse | |
| Syngnathiformes | Syngnathidae | Hippocampus trimaculatus | native | Longnose seahorse | |
| Eupercaria/misc | Scaridae | Hipposcarus harid | native | Candelamoa parrotfish | |
| Eupercaria/misc | Scaridae | Hipposcarus longiceps | native | Pacific longnose parrotfish | Isdang loro |
| Lophiiformes | Histiophrynidae | Histiophryne cryptacanthus | native | Cryptic anglerfish | |
| Acropomatiformes | Pentacerotidae | Histiopterus typus | native | Sailfin armourhead | |
| Lophiiformes | Antennariidae | Histrio histrio | native | Sargassumfish | |
| Eupercaria/misc | Labridae | Hologymnosus annulatus | native | Ring wrasse | Bankilan |
| Eupercaria/misc | Labridae | Hologymnosus doliatus | native | Pastel ringwrasse | Bankilan |
| Eupercaria/misc | Labridae | Hologymnosus rhodonotus | native | Redback longface wrasse | |
| Eupercaria/misc | Malacanthidae | Hoplolatilus chlupatyi | native | Chameleon sand tilefish | |
| Eupercaria/misc | Malacanthidae | Hoplolatilus cuniculus | native | Dusky tilefish | |
| Eupercaria/misc | Malacanthidae | Hoplolatilus fourmanoiri | native | Yellow-spotted tilefish | Matang dagat |
| Eupercaria/misc | Malacanthidae | Hoplolatilus fronticinctus | native | Pastel tilefish | |
| Eupercaria/misc | Malacanthidae | Hoplolatilus marcosi | native | Redback sand tilefish | |
| Eupercaria/misc | Malacanthidae | Hoplolatilus purpureus | native | Purple sand tilefish | |
| Eupercaria/misc | Malacanthidae | Hoplolatilus randalli | native | Randall’s tilefish | |
| Eupercaria/misc | Malacanthidae | Hoplolatilus starcki | native | Stark's tilefish | |
| Atheriniformes | Atherinidae | Hypoatherina barnesi | native | Barnes' silverside | Langaray pako |
| Atheriniformes | Atherinidae | Hypoatherina ovalaua | native | Fijian silverside | |
| Atheriniformes | Atherinidae | Hypoatherina temminckii | native | Samoan silverside | Gono |
| Beloniformes | Hemiramphidae | Hyporhamphus affinis | native | Tropical halfbeak | Buging |
| Beloniformes | Hemiramphidae | Hyporhamphus balinensis | native | Balinese garfish | Buging |
| Beloniformes | Hemiramphidae | Hyporhamphus dussumieri | native | Dussumier's halfbeak | Bungug |
| Eupercaria/misc | Labridae | Iniistius aneitensis | native | Yellowblotch razorfish | Bankilan |
| Eupercaria/misc | Labridae | Iniistius bakunawa | native | Eclipse-spot razor wrasse | Eclipse-spot razor wrasse |
| Eupercaria/misc | Labridae | Iniistius celebicus | native | Celebes razorfish | |
| Eupercaria/misc | Labridae | Iniistius melanopus | native | Yellowpatch razorfish | |
| Eupercaria/misc | Labridae | Iniistius pavo | native | Peacock wrasse | Mameng |
| Eupercaria/misc | Labridae | Iniistius pentadactylus | native | Fivefinger wrasse | Bapor-bapor |
| Perciformes/Scorpaenoidei | Synanceiidae | Inimicus didactylus | native | Bearded ghoul | |
| Perciformes/Scorpaenoidei | Synanceiidae | Inimicus sinensis | native | Spotted ghoul | |
| Blenniiformes | Blenniidae | Istiblennius dussumieri | native | Streaky rockskipper | |
| Blenniiformes | Blenniidae | Istiblennius edentulus | native | Rippled rockskipper | |
| Blenniiformes | Blenniidae | Istiblennius lineatus | native | Lined rockskipper | |
| Gobiiformes | Gobiidae | Istigobius decoratus | native | Decorated goby | Bia |
| Gobiiformes | Gobiidae | Istigobius goldmanni | native | Goldman's goby | Bia |
| Gobiiformes | Gobiidae | Istigobius ornatus | native | Ornate goby | Bia |
| Gobiiformes | Gobiidae | Istigobius rigilius | native | Rigilius goby | Bia |
| Gobiiformes | Gobiidae | Istigobius spence | native | Pearl goby | |
| Kurtiformes | Apogonidae | Jaydia ellioti | native | Flag-in cardinal-fish | Suga |
| Kurtiformes | Apogonidae | Jaydia erythrophthalma | native | ||
| Kurtiformes | Apogonidae | Jaydia novaeguineae | native | ||
| Kurtiformes | Apogonidae | Jaydia striata | native | ||
| Kurtiformes | Apogonidae | Jaydia striatodes | native | ||
| Carangiformes | Carangidae | Kaiwarinus equula | native | Whitefin trevally | Sibo |
| Anguilliformes | Chlopsidae | Kaupichthys atronasus | native | Black-nostril false moray | |
| Anguilliformes | Chlopsidae | Kaupichthys brachychirus | native | Shortfin false moray | |
| Gobiiformes | Gobiidae | Koumansetta hectori | native | Hector's goby | Bia |
| Gobiiformes | Gobiidae | Koumansetta rainfordi | native | Old glory | Bia |
| Centrarchiformes | Kuhliidae | Kuhlia mugil | native | Barred flagtail | Damagan |
| Centrarchiformes | Kuhliidae | Kuhlia rupestris | native | Rock flagtail | Damagan |
| Centrarchiformes | Kyphosidae | Kyphosus bigibbus | native | Brown chub | Idek |
| Centrarchiformes | Kyphosidae | Kyphosus cinerascens | native | Blue sea chub | Ilak |
| Centrarchiformes | Kyphosidae | Kyphosus vaigiensis | native | Brassy chub | Ilak |
| Ovalentaria/misc | Pseudochromidae | Labracinus atrofasciatus | native | Blackbarred dottyback | |
| Ovalentaria/misc | Pseudochromidae | Labracinus cyclophthalmus | native | Fire-tail devil | Ilad |
| Eupercaria/misc | Labridae | Labrichthys unilineatus | native | Tubelip wrasse | Lulukdayan |
| Eupercaria/misc | Labridae | Labroides bicolor | native | Bicolor cleaner wrasse | Lulukdayan |
| Eupercaria/misc | Labridae | Labroides dimidiatus | native | Bluestreak cleaner wrasse | Mameng |
| Eupercaria/misc | Labridae | Labroides pectoralis | native | Blackspot cleaner wrasse | |
| Eupercaria/misc | Labridae | Labropsis alleni | native | Allen's tubelip | |
| Eupercaria/misc | Labridae | Labropsis australis | native | Southern tubelip | |
| Eupercaria/misc | Labridae | Labropsis manabei | native | Northern tubelip | |
| Eupercaria/misc | Labridae | Labropsis xanthonota | native | Yellowback tubelip | |
| Tetraodontiformes | Ostraciidae | Lactoria cornuta | native | Longhorn cowfish | Tabarong |
| Tetraodontiformes | Ostraciidae | Lactoria diaphana | native | Roundbelly cowfish | Kaban-kaban |
| Tetraodontiformes | Ostraciidae | Lactoria fornasini | native | Thornback cowfish | |
| Tetraodontiformes | Tetraodontidae | Lagocephalus sceleratus | native | Silver-cheeked toadfish | Tinga-tinga |
| Blenniiformes | Blenniidae | Laiphognathus multimaculatus | native | Spotty blenny | |
| Anguilliformes | Ophichthidae | Lamnostoma orientale | native | Oriental worm-eel | |
| Anguilliformes | Ophichthidae | Leiuranus semicinctus | native | Saddled snake-eel | |
| Anguilliformes | Ophichthidae | Leiuranus versicolor | native | Convict snake eel | |
| Gobiesociformes | Gobiesocidae | Lepadichthys lineatus | native | Doubleline clingfish | |
| Gobiesociformes | Gobiesocidae | Lepadichthys springeri | native | Springer's clingfish | Springer's clingfish |
| Ovalentaria/misc | Pomacentridae | Lepidozygus tapeinosoma | native | Fusilier damselfish | |
| Eupercaria/misc | Labridae | Leptojulis cyanopleura | native | Shoulder-spot wrasse | Lulukdayan |
| Eupercaria/misc | Scaridae | Leptoscarus vaigiensis | native | Marbled parrotfish | Tamulmol |
| Eupercaria/misc | Lethrinidae | Lethrinus amboinensis | native | Ambon emperor | Bukawin |
| Eupercaria/misc | Lethrinidae | Lethrinus atkinsoni | native | Pacific yellowtail emperor | Bihilya |
| Eupercaria/misc | Lethrinidae | Lethrinus erythracanthus | native | Orange-spotted emperor | Savung |
| Eupercaria/misc | Lethrinidae | Lethrinus erythropterus | native | Longfin emperor | Batilya |
| Eupercaria/misc | Lethrinidae | Lethrinus genivittatus | native | Longspine emperor | Bitilya |
| Eupercaria/misc | Lethrinidae | Lethrinus harak | native | Thumbprint emperor | Bitilya |
| Eupercaria/misc | Lethrinidae | Lethrinus lentjan | native | Pink ear emperor | Batilya |
| Eupercaria/misc | Lethrinidae | Lethrinus microdon | native | Smalltooth emperor | Bitilya |
| Eupercaria/misc | Lethrinidae | Lethrinus miniatus | native | Trumpet emperor | Bitilya |
| Eupercaria/misc | Lethrinidae | Lethrinus nebulosus | native | Spangled emperor | Bitilya |
| Eupercaria/misc | Lethrinidae | Lethrinus obsoletus | native | Orange-striped emperor | Bitilya |
| Eupercaria/misc | Lethrinidae | Lethrinus olivaceus | native | Longface emperor | Bukawin |
| Eupercaria/misc | Lethrinidae | Lethrinus ornatus | native | Ornate emperor | Bukawin |
| Eupercaria/misc | Lethrinidae | Lethrinus ravus | native | Drab emperor | |
| Eupercaria/misc | Lethrinidae | Lethrinus reticulatus | native | Red snout emperor | Bukawin |
| Eupercaria/misc | Lethrinidae | Lethrinus rubrioperculatus | native | Spotcheek emperor | Bitilya |
| Eupercaria/misc | Lethrinidae | Lethrinus semicinctus | native | Black blotch emperor | Bukawin |
| Eupercaria/misc | Lethrinidae | Lethrinus variegatus | native | Slender emperor | Bukawin bilog |
| Eupercaria/misc | Lethrinidae | Lethrinus xanthochilus | native | Yellowlip emperor | Camasuhon |
| Acropomatiformes | Creediidae | Limnichthys fasciatus | native | Barred sand burrower | |
| Perciformes/Serranoidei | Liopropomatidae | Liopropoma collettei | native | Collette's basslet | |
| Perciformes/Serranoidei | Liopropomatidae | Liopropoma mitratum | native | Pinstriped basslet | |
| Perciformes/Serranoidei | Liopropomatidae | Liopropoma multilineatum | native | Manyline perch | |
| Perciformes/Serranoidei | Liopropomatidae | Liopropoma pallidum | native | Pallid basslet | |
| Perciformes/Serranoidei | Liopropomatidae | Liopropoma susumi | native | Meteor perch | |
| Perciformes/Serranoidei | Liopropomatidae | Liopropoma swalesi | native | Swales' basslet | |
| Blenniiformes | Blenniidae | Litobranchus fowleri | native | Fowler's rockskipper | |
| Lophiiformes | Histiophrynidae | Lophiocharon trisignatus | native | Three-spot frogfish | |
| Gobiiformes | Gobiidae | Lotilia klausewitzi | native | Dancer shrimp goby | |
| Ovalentaria/misc | Pseudochromidae | Lubbockichthys multisquamatus | native | Fine-scaled dottyback | |
| Eupercaria/misc | Lutjanidae | Lutjanus argentimaculatus | native | Mangrove red snapper | Gingaw |
| Eupercaria/misc | Lutjanidae | Lutjanus bengalensis | native | Bengal snapper | Aluman |
| Eupercaria/misc | Lutjanidae | Lutjanus biguttatus | native | Two-spot banded snapper | Dayangdang batuhan |
| Eupercaria/misc | Lutjanidae | Lutjanus bohar | native | Two-spot red snapper | Langisi |
| Eupercaria/misc | Lutjanidae | Lutjanus boutton | native | Moluccan snapper | Matangal |
| Eupercaria/misc | Lutjanidae | Lutjanus carponotatus | native | Spanish flag snapper | Alsis |
| Eupercaria/misc | Lutjanidae | Lutjanus decussatus | native | Checkered snapper | Dalag dalag |
| Eupercaria/misc | Lutjanidae | Lutjanus dodecacanthoides | native | Sunbeam snapper | Maya-maya |
| Eupercaria/misc | Lutjanidae | Lutjanus ehrenbergii | native | Blackspot snapper | Alsis |
| Eupercaria/misc | Lutjanidae | Lutjanus erythropterus | native | Crimson snapper | Aha-an |
| Eupercaria/misc | Lutjanidae | Lutjanus fulviflamma | native | Dory snapper | Alum |
| Eupercaria/misc | Lutjanidae | Lutjanus fulvus | native | Blacktail snapper | Bangbangin |
| Eupercaria/misc | Lutjanidae | Lutjanus gibbus | native | Humpback red snapper | Dapak |
| Eupercaria/misc | Lutjanidae | Lutjanus johnii | native | John's snapper | Maya maya |
| Eupercaria/misc | Lutjanidae | Lutjanus kasmira | native | Common bluestripe snapper | Maya maya |
| Eupercaria/misc | Lutjanidae | Lutjanus lemniscatus | native | Yellowstreaked snapper | Maya-maya |
| Eupercaria/misc | Lutjanidae | Lutjanus lunulatus | native | Lunartail snapper | Maya maya |
| Eupercaria/misc | Lutjanidae | Lutjanus lutjanus | native | Bigeye snapper | Lalagan |
| Eupercaria/misc | Lutjanidae | Lutjanus malabaricus | native | Malabar blood snapper | Lugho |
| Eupercaria/misc | Lutjanidae | Lutjanus monostigma | native | One-spot snapper | Maya maya |
| Eupercaria/misc | Lutjanidae | Lutjanus quinquelineatus | native | Five-lined snapper | Admon |
| Eupercaria/misc | Lutjanidae | Lutjanus rivulatus | native | Blubberlip snapper | Lugho |
| Eupercaria/misc | Lutjanidae | Lutjanus rufolineatus | native | Yellow-lined snapper | Alsis |
| Eupercaria/misc | Lutjanidae | Lutjanus russellii | native | Russell's snapper | Maya maya |
| Eupercaria/misc | Lutjanidae | Lutjanus sebae | native | Emperor red snapper | Maya maya |
| Eupercaria/misc | Lutjanidae | Lutjanus semicinctus | native | Black-banded snapper | Maya maya |
| Eupercaria/misc | Lutjanidae | Lutjanus timoriensis | native | Timor snapper | Alsis |
| Eupercaria/misc | Lutjanidae | Lutjanus vitta | native | Brownstripe red snapper | Dayangdang |
| Eupercaria/misc | Lutjanidae | Lutjanus xanthopinnis | native | Yellowfin snapper | Maya maya |
| Perciformes/Serranoidei | Anthiadidae | Luzonichthys waitei | native | Waite's splitfin | |
| Eupercaria/misc | Lutjanidae | Macolor macularis | native | Midnight snapper | Maya maya |
| Eupercaria/misc | Lutjanidae | Macolor niger | native | Black and white snapper | Maya maya |
| Gobiiformes | Gobiidae | Macrodontogobius wilburi | native | Largetooth goby | Bia |
| Eupercaria/misc | Labridae | Macropharyngodon meleagris | native | Blackspotted wrasse | Bankilan |
| Eupercaria/misc | Labridae | Macropharyngodon negrosensis | native | Yellowspotted wrasse | Buntogon |
| Eupercaria/misc | Labridae | Macropharyngodon ornatus | native | False leopard | |
| Gobiiformes | Gobiidae | Mahidolia mystacina | native | Flagfin prawn goby | Bia |
| Eupercaria/misc | Malacanthidae | Malacanthus brevirostris | native | Quakerfish | Matang dagat |
| Eupercaria/misc | Malacanthidae | Malacanthus latovittatus | native | Blue blanquillo | Matang dagat |
| Ovalentaria/misc | Pseudochromidae | Manonichthys alleni | native | Sabah dottyback | |
| Ovalentaria/misc | Pseudochromidae | Manonichthys scintilla | native | Sparkfin Dottyback | Sparkfin Dottyback |
| Ovalentaria/misc | Pseudochromidae | Manonichthys winterbottomi | native | False midnight dottyback | False midnight dottyback |
| Carangiformes | Carangidae | Megalaspis cordyla | native | Torpedo scad | Kagiskis |
| Blenniiformes | Blenniidae | Meiacanthus atrodorsalis | native | Forktail blenny | Paku |
| Blenniiformes | Blenniidae | Meiacanthus ditrema | native | One-striped poison-fang blenny | |
| Blenniiformes | Blenniidae | Meiacanthus grammistes | native | Striped poison-fang blenny | |
| Tetraodontiformes | Balistidae | Melichthys niger | native | Black triggerfish | Pakol |
| Tetraodontiformes | Balistidae | Melichthys vidua | native | Pinktail triggerfish | Papakol |
| Carangaria/misc | Menidae | Mene maculata | native | Moonfish | Bandurya |
| Ophidiiformes | Bythitidae | Microbrotula bentleyi | native | Many-ray cusk | |
| Centrarchiformes | Microcanthidae | Microcanthus strigatus | native | Stripey | |
| Syngnathiformes | Syngnathidae | Micrognathus andersonii | native | Shortnose pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Micrognathus micronotopterus | native | Tidepool pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Minyichthys myersi | native | Myer's pipefish | Dagum-dagum |
| Perciformes/Serranoidei | Anthiadidae | Mirolabrichthys pascalus | native | Amethyst anthias | |
| Perciformes/Serranoidei | Anthiadidae | Mirolabrichthys tuka | native | Yellowstriped fairy basslet | |
| Myliobatiformes | Mobulidae | Mobula birostris | native | Giant manta | Pagi |
| Myliobatiformes | Mobulidae | Mobula japanica | native | Spinetail mobula | Pasa-pasa |
| Myliobatiformes | Mobulidae | Mobula tarapacana | native | Chilean devil ray | |
| Tetraodontiformes | Monacanthidae | Monacanthus chinensis | native | Fan-bellied leatherjacket | Pakol |
| Trachichthyiformes | Monocentridae | Monocentris chrysadamas | native | Golden-diamond pineapple fish | |
| Eupercaria/misc | Lethrinidae | Monotaxis grandoculis | native | Humpnose big-eye bream | Bitilya |
| Eupercaria/misc | Lethrinidae | Monotaxis heterodon | native | Redfin emperor | |
| Anguilliformes | Moringuidae | Moringua abbreviata | native | ||
| Anguilliformes | Moringuidae | Moringua microchir | native | Lesser thrush eel | |
| Mulliformes | Mullidae | Mulloidichthys flavolineatus | native | Yellowstripe goatfish | Saramulyete |
| Mulliformes | Mullidae | Mulloidichthys pfluegeri | native | Orange goatfish | Saramulyete |
| Mulliformes | Mullidae | Mulloidichthys vanicolensis | native | Yellowfin goatfish | Saramuliete |
| Anguilliformes | Ophichthidae | Muraenichthys gymnopterus | native | ||
| Anguilliformes | Ophichthidae | Muraenichthys schultzei | native | Maimed snake eel | |
| Anguilliformes | Ophichthidae | Myrichthys colubrinus | native | Harlequin snake eel | |
| Anguilliformes | Ophichthidae | Myrichthys maculosus | native | Tiger snake eel | |
| Holocentriformes | Holocentridae | Myripristis adusta | native | Shadowfin soldierfish | Baga-baga |
| Holocentriformes | Holocentridae | Myripristis amaena | native | Brick soldierfish | Baga-baga |
| Holocentriformes | Holocentridae | Myripristis berndti | native | Blotcheye soldierfish | Baga-baga |
| Holocentriformes | Holocentridae | Myripristis botche | native | Blacktip soldierfish | Baga-baga |
| Holocentriformes | Holocentridae | Myripristis hexagona | native | Doubletooth soldierfish | Baya-baya |
| Holocentriformes | Holocentridae | Myripristis kuntee | native | Shoulderbar soldierfish | Baga-baga |
| Holocentriformes | Holocentridae | Myripristis murdjan | native | Pinecone soldierfish | Baga-baga |
| Holocentriformes | Holocentridae | Myripristis pralinia | native | Scarlet soldierfish | Baga-baga |
| Holocentriformes | Holocentridae | Myripristis violacea | native | Lattice soldierfish | Baga-baga |
| Holocentriformes | Holocentridae | Myripristis vittata | native | Whitetip soldierfish | Baga-baga |
| Holocentriformes | Holocentridae | Myripristis woodsi | native | Whitespot soldierfish | |
| Blenniiformes | Blenniidae | Nannosalarias nativitatis | native | Pygmy blenny | |
| Acanthuriformes | Acanthuridae | Naso annulatus | native | Whitemargin unicornfish | Bagis |
| Acanthuriformes | Acanthuridae | Naso brachycentron | native | Humpback unicornfish | Surahan |
| Acanthuriformes | Acanthuridae | Naso brevirostris | native | Spotted unicornfish | Surahan |
| Acanthuriformes | Acanthuridae | Naso caeruleacauda | native | Blue unicorn | |
| Acanthuriformes | Acanthuridae | Naso fageni | native | Horseface unicornfish | Tarian |
| Acanthuriformes | Acanthuridae | Naso hexacanthus | native | Sleek unicornfish | Bagis |
| Acanthuriformes | Acanthuridae | Naso lituratus | native | Orangespine unicornfish | Bagis |
| Acanthuriformes | Acanthuridae | Naso lopezi | native | Elongate unicornfish | Surahan |
| Acanthuriformes | Acanthuridae | Naso maculatus | native | Spotted unicornfish | |
| Acanthuriformes | Acanthuridae | Naso mcdadei | native | Squarenose unicornfish | |
| Acanthuriformes | Acanthuridae | Naso minor | native | Slender unicorn | Kalangkang |
| Acanthuriformes | Acanthuridae | Naso reticulatus | native | Reticulate unicornfish | |
| Acanthuriformes | Acanthuridae | Naso tergus | native | ||
| Acanthuriformes | Acanthuridae | Naso thynnoides | native | Oneknife unicornfish | Tudluan |
| Acanthuriformes | Acanthuridae | Naso tonganus | native | Bulbnose unicornfish | Isdang ilong |
| Acanthuriformes | Acanthuridae | Naso unicornis | native | Bluespine unicornfish | Surahan |
| Acanthuriformes | Acanthuridae | Naso vlamingii | native | Bignose unicornfish | Tudluan |
| Carangiformes | Carangidae | Naucrates ductor | native | Pilotfish | Tigre |
| Kurtiformes | Apogonidae | Neamia articycla | native | Circular cardinalfish | |
| Kurtiformes | Apogonidae | Neamia octospina | native | Eightspine cardinalfish | Dangat |
| Orectolobiformes | Ginglymostomatidae | Nebrius ferrugineus | native | Tawny nurse shark | Pating |
| Kurtiformes | Apogonidae | Nectamia bandanensis | native | Bigeye cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Nectamia fusca | native | Ghost cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Nectamia luxuria | native | Multi-barred cardinalfish | |
| Kurtiformes | Apogonidae | Nectamia savayensis | native | Samoan cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Nectamia similis | native | Similar cardinalfish | |
| Kurtiformes | Apogonidae | Nectamia viria | native | Bracelet cardinalfish | |
| Carcharhiniformes | Carcharhinidae | Negaprion acutidens | native | Sicklefin lemon shark | Pating |
| Perciformes/Serranoidei | Anthiadidae | Nemanthias bicolor | native | Bicolor anthias | |
| Perciformes/Serranoidei | Anthiadidae | Nemanthias dispar | native | Peach fairy basslet | |
| Gobiiformes | Microdesmidae | Nemateleotris decora | native | Elegant firefish | |
| Gobiiformes | Microdesmidae | Nemateleotris magnifica | native | Fire goby | |
| Eupercaria/misc | Nemipteridae | Nemipterus furcosus | native | Fork-tailed threadfin bream | Bisugo |
| Centrarchiformes | Cirrhitidae | Neocirrhites armatus | native | Flame hawkfish | |
| Ovalentaria/misc | Pomacentridae | Neoglyphidodon crossi | native | Cross' damsel | |
| Ovalentaria/misc | Pomacentridae | Neoglyphidodon melas | native | Bowtie damselfish | Palata |
| Ovalentaria/misc | Pomacentridae | Neoglyphidodon nigroris | native | Black-and-gold chromis | Kikiringan |
| Ovalentaria/misc | Pomacentridae | Neoglyphidodon oxyodon | native | Bluestreak damselfish | Palata |
| Ovalentaria/misc | Pomacentridae | Neoglyphidodon thoracotaeniatus | native | Barhead damsel | |
| Holocentriformes | Holocentridae | Neoniphon argenteus | native | Clearfin squirrelfish | Baga-baga |
| Holocentriformes | Holocentridae | Neoniphon aurolineatus | native | Yellowstriped squirrelfish | |
| Holocentriformes | Holocentridae | Neoniphon opercularis | native | Blackfin squirrelfish | Baga-baga |
| Holocentriformes | Holocentridae | Neoniphon sammara | native | Sammara squirrelfish | Baga-baga |
| Ovalentaria/misc | Pomacentridae | Neopomacentrus anabatoides | native | Silver demoiselle | Palata |
| Ovalentaria/misc | Pomacentridae | Neopomacentrus azysron | native | Yellowtail demoiselle | |
| Ovalentaria/misc | Pomacentridae | Neopomacentrus bankieri | native | Chinese demoiselle | Palata |
| Ovalentaria/misc | Pomacentridae | Neopomacentrus cyanomos | native | Regal demoiselle | |
| Ovalentaria/misc | Pomacentridae | Neopomacentrus filamentosus | native | Brown demoiselle | Palata |
| Ovalentaria/misc | Pomacentridae | Neopomacentrus nemurus | native | Coral demoiselle | |
| Ovalentaria/misc | Pomacentridae | Neopomacentrus violascens | native | Violet demoiselle | |
| Myliobatiformes | Dasyatidae | Neotrygon orientalis | native | ||
| Perciformes/Percoidei | Niphonidae | Niphon spinosus | native | Ara | |
| Blenniiformes | Tripterygiidae | Norfolkia brachylepis | native | Tropical scaly-headed triplefin | |
| Eupercaria/misc | Labridae | Novaculichthys taeniourus | native | Rockmover wrasse | Mameng |
| Eupercaria/misc | Labridae | Novaculoides macrolepidotus | native | Seagrass wrasse | Mameng |
| Perciformes/Serranoidei | Anthiadidae | Odontanthias unimaculatus | native | ||
| Tetraodontiformes | Balistidae | Odonus niger | native | Red-toothed triggerfish | Kaputput |
| Blenniiformes | Blenniidae | Omobranchus germaini | native | Germain's blenny | |
| Blenniiformes | Blenniidae | Omobranchus obliquus | native | Roundhead blenny | Mangrove blenny |
| Anguilliformes | Ophichthidae | Ophichthus bonaparti | native | Napoleon snake eel | |
| Anguilliformes | Ophichthidae | Ophichthus cephalozona | native | Dark-shouldered snake eel | Igat |
| Anguilliformes | Ophichthidae | Ophichthus polyophthalmus | native | Many-eyed snake-eel | |
| Ovalentaria/misc | Opistognathidae | Opistognathus albomaculatus | native | Whitespotted jawfish | Whitespotted jawfish |
| Ovalentaria/misc | Opistognathidae | Opistognathus dendriticus | native | Dendtric jawfish | Dendtric jawfish |
| Ovalentaria/misc | Opistognathidae | Opistognathus solorensis | native | Solor jawfish | |
| Gobiiformes | Gobiidae | Oplopomops diacanthus | native | Hole goby | |
| Gobiiformes | Gobiidae | Oplopomus caninoides | native | Triplespot goby | |
| Gobiiformes | Gobiidae | Oplopomus oplopomus | native | Spinecheek goby | Bia |
| Holocentriformes | Holocentridae | Ostichthys japonicus | native | Japanese soldierfish | |
| Kurtiformes | Apogonidae | Ostorhinchus angustatus | native | Broadstriped cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus apogonoides | native | Short-tooth cardinal | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus atrogaster | native | Blackbelly cardinalfish | |
| Kurtiformes | Apogonidae | Ostorhinchus aureus | native | Ring-tailed cardinalfish | Bungka |
| Kurtiformes | Apogonidae | Ostorhinchus bryx | native | Offshore cardinalfish | |
| Kurtiformes | Apogonidae | Ostorhinchus chrysopomus | native | Spotted-gill cardinalfish | Kultit |
| Kurtiformes | Apogonidae | Ostorhinchus chrysotaenia | native | Yellowlined cardinalfish | |
| Kurtiformes | Apogonidae | Ostorhinchus compressus | native | Ochre-striped cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus cookii | native | Cook's cardinalfish | |
| Kurtiformes | Apogonidae | Ostorhinchus cyanosoma | native | Yellowstriped cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus dispar | native | Redspot cardinalfish | |
| Kurtiformes | Apogonidae | Ostorhinchus diversus | native | ||
| Kurtiformes | Apogonidae | Ostorhinchus doederleini | native | Doederlein's cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus endekataenia | native | Candystripe cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus fasciatus | native | Broadbanded cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus fleurieu | native | Flower cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus franssedai | native | Frans' cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus griffini | native | Hookfin cardinalfish | |
| Kurtiformes | Apogonidae | Ostorhinchus hartzfeldii | native | Hartzfeld's cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus hoevenii | native | Frostfin cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus komodoensis | native | Komodo cardinalfish | |
| Kurtiformes | Apogonidae | Ostorhinchus luteus | native | Yellow cardinalfish | Moong |
| Kurtiformes | Apogonidae | Ostorhinchus margaritophorus | native | Red-striped cardinalfish | Kultit |
| Kurtiformes | Apogonidae | Ostorhinchus melanoproctus | native | Blackvent cardinalfish | |
| Kurtiformes | Apogonidae | Ostorhinchus moluccensis | native | Moluccan cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus monospilus | native | Moluccen cardinal | |
| Kurtiformes | Apogonidae | Ostorhinchus multilineatus | native | Many-lined cardinalfish | |
| Kurtiformes | Apogonidae | Ostorhinchus nanus | native | Tiny cardinalfish | |
| Kurtiformes | Apogonidae | Ostorhinchus neotes | native | Mini cardinalfish | Kultit |
| Kurtiformes | Apogonidae | Ostorhinchus nigrofasciatus | native | Blackstripe cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus notatus | native | Spotnape cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus novemfasciatus | native | Sevenstriped cardinalfish | Bungka |
| Kurtiformes | Apogonidae | Ostorhinchus parvulus | native | Dangat | |
| Kurtiformes | Apogonidae | Ostorhinchus pleuron | native | Rib-bar cardinalfish | |
| Kurtiformes | Apogonidae | Ostorhinchus rubrimacula | native | Rubyspot cardinalfish | |
| Kurtiformes | Apogonidae | Ostorhinchus sealei | native | Seale's cardinalfish | Kultit |
| Kurtiformes | Apogonidae | Ostorhinchus selas | native | Meteor cardinalfish | Kultit |
| Kurtiformes | Apogonidae | Ostorhinchus semilineatus | native | Half-lined cardinal | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus septemstriatus | native | Sevenband cardinalfish | Moong |
| Kurtiformes | Apogonidae | Ostorhinchus taeniophorus | native | Reef-flat cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Ostorhinchus wassinki | native | Kupang cardinalfish | Kultit |
| Tetraodontiformes | Ostraciidae | Ostracion cubicum | native | Yellow boxfish | Baka baka |
| Tetraodontiformes | Ostraciidae | Ostracion meleagris | native | Whitespotted boxfish | Kaban-kaban |
| Tetraodontiformes | Ostraciidae | Ostracion rhinorhynchos | native | Horn-nosed boxfish | Baka baka |
| Tetraodontiformes | Ostraciidae | Ostracion solorense | native | Reticulate boxfish | |
| Eupercaria/misc | Labridae | Oxycheilinus arenatus | native | Speckled maori wrasse | Mameng |
| Eupercaria/misc | Labridae | Oxycheilinus bimaculatus | native | Two-spot wrasse | Bankilan |
| Eupercaria/misc | Labridae | Oxycheilinus celebicus | native | Celebes wrasse | Mameng |
| Eupercaria/misc | Labridae | Oxycheilinus digramma | native | Cheeklined wrasse | Mameng |
| Eupercaria/misc | Labridae | Oxycheilinus orientalis | native | Oriental maori wrasse | Mameng |
| Eupercaria/misc | Labridae | Oxycheilinus samurai | native | Black-tip Maori-wrasse | Black-tip Maori-wrasse |
| Eupercaria/misc | Labridae | Oxycheilinus unifasciatus | native | Ringtail maori wrasse | Bankilan |
| Centrarchiformes | Cirrhitidae | Oxycirrhites typus | native | Longnose hawkfish | |
| Gobiiformes | Microdesmidae | Oxymetopon compressus | native | Robust ribbongoby | |
| Gobiiformes | Microdesmidae | Oxymetopon cyanoctenosum | native | Blue-barred ribbon goby | |
| Tetraodontiformes | Monacanthidae | Oxymonacanthus longirostris | native | Harlequin filefish | Pakol |
| Gobiiformes | Gobiidae | Oxyurichthys papuensis | native | Frogface goby | Bia |
| Eupercaria/misc | Sparidae | Pagrus auratus | native | Silver seabream | |
| Perciformes/Scorpaenoidei | Platycephalidae | Papilloculiceps longiceps | native | Tentacled flathead | |
| Eupercaria/misc | Lutjanidae | Paracaesio sordida | native | Dirty ordure snapper | |
| Eupercaria/misc | Lutjanidae | Paracaesio xanthura | native | Yellowtail blue snapper | |
| Acanthuriformes | Acanthuridae | Paracanthurus hepatus | native | Palette surgeonfish | |
| Perciformes/Scorpaenoidei | Tetrarogidae | Paracentropogon zonatus | native | Bandtail waspfish | |
| Acanthuriformes | Pomacanthidae | Paracentropyge multifasciata | native | Barred angelfish | Paro-paro |
| Acanthuriformes | Chaetodontidae | Parachaetodon ocellatus | native | Sixspine butterflyfish | Paru-paro |
| Eupercaria/misc | Labridae | Paracheilinus angulatus | native | Angular flasher | |
| Eupercaria/misc | Labridae | Paracheilinus bellae | native | Bell's flasher | |
| Eupercaria/misc | Labridae | Paracheilinus carpenteri | native | Pink flasher | |
| Eupercaria/misc | Labridae | Paracheilinus filamentosus | native | Filamentous wrasse | Ulugsuy |
| Eupercaria/misc | Labridae | Paracheilinus lineopunctatus | native | Spot-lined flasher | |
| Centrarchiformes | Cirrhitidae | Paracirrhites arcatus | native | Arc-eye hawkfish | |
| Centrarchiformes | Cirrhitidae | Paracirrhites forsteri | native | Blackside hawkfish | Turagaw |
| Ophidiiformes | Dinematichthyidae | Paradiancistrus cuyoensis | endemic | Cuyo coralbrotula | Cuyo coralbrotula |
| Gobiiformes | Gobiidae | Paragobiodon echinocephalus | native | Redhead goby | Bia |
| Gobiiformes | Gobiidae | Paragobiodon melanosoma | native | Dark coral goby | |
| Gobiiformes | Gobiidae | Paragobiodon modestus | native | Warthead goby | |
| Gobiiformes | Gobiidae | Paragobiodon xanthosoma | native | Emerald coral goby | Bia |
| Tetraodontiformes | Monacanthidae | Paraluteres prionurus | native | False puffer | |
| Tetraodontiformes | Monacanthidae | Paramonacanthus cryptodon | native | ||
| Tetraodontiformes | Monacanthidae | Paramonacanthus nipponensis | native | Japanese leatherjacket | |
| Perciformes/Uranoscopoidei | Pinguipedidae | Parapercis clathrata | native | Latticed sandperch | |
| Perciformes/Uranoscopoidei | Pinguipedidae | Parapercis cylindrica | native | Cylindrical sandperch | Banghotin |
| Perciformes/Uranoscopoidei | Pinguipedidae | Parapercis flavipinna | native | Yellowfin sandperch | |
| Perciformes/Uranoscopoidei | Pinguipedidae | Parapercis hexophtalma | native | Speckled sandperch | Tika |
| Perciformes/Uranoscopoidei | Pinguipedidae | Parapercis hoi | native | Ho's sandperch | |
| Perciformes/Uranoscopoidei | Pinguipedidae | Parapercis lineopunctata | native | Nosestripe sandperch | |
| Perciformes/Uranoscopoidei | Pinguipedidae | Parapercis millepunctata | native | Black dotted sand perch | Tika |
| Perciformes/Uranoscopoidei | Pinguipedidae | Parapercis multiplicata | native | Redbarred sandperch | |
| Perciformes/Uranoscopoidei | Pinguipedidae | Parapercis rubricaudalis | native | Redtail sandperch | |
| Perciformes/Uranoscopoidei | Pinguipedidae | Parapercis schauinslandii | native | Redspotted sandperch | |
| Perciformes/Uranoscopoidei | Pinguipedidae | Parapercis snyderi | native | U-mark sandperch | |
| Perciformes/Uranoscopoidei | Pinguipedidae | Parapercis soliorta | native | Sunrise sandperch | Sunrise sandperch |
| Perciformes/Uranoscopoidei | Pinguipedidae | Parapercis tetracantha | native | Reticulated sandperch | |
| Perciformes/Uranoscopoidei | Pinguipedidae | Parapercis xanthozona | native | Yellowbar sandperch | Buto-sarnal |
| Siluriformes | Plotosidae | Paraplotosus albilabris | native | Whitelipped eel catfish | Alimusang |
| Acropomatiformes | Pempheridae | Parapriacanthus marei | native | Redfin sweeper | |
| Acropomatiformes | Pempheridae | Parapriacanthus ransonneti | native | Golden sweeper | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Parascorpaena aurita | native | Golden scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Parascorpaena mcadamsi | native | McAdam's scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Parascorpaena mossambica | native | Mozambique scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Parascorpaena picta | native | Northern scorpionfish | |
| Carangiformes | Carangidae | Parastromateus niger | native | Black pomfret | Duhay |
| Pleuronectiformes | Soleidae | Pardachirus pavoninus | native | Peacock sole | Dapa |
| Blenniiformes | Blenniidae | Parenchelyurus hepburni | native | Hepburn's blenny | |
| Gobiiformes | Microdesmidae | Parioglossus formosus | native | Beautiful hover goby | |
| Gobiiformes | Microdesmidae | Parioglossus nudus | native | Naked hover goby | |
| Gobiiformes | Microdesmidae | Parioglossus palustris | native | Borneo hoverer | |
| Gobiiformes | Microdesmidae | Parioglossus philippinus | native | Philippine dartfish | |
| Gobiiformes | Microdesmidae | Parioglossus rainfordi | native | Rainford's dartfish | |
| Gobiiformes | Microdesmidae | Parioglossus raoi | native | Rao's hover goby | |
| Gobiiformes | Microdesmidae | Parioglossus taeniatus | native | Taeniatus dartfish | |
| Ovalentaria/misc | Pomacentridae | Parma oligolepis | native | Big-scale parma | |
| Ovalentaria/misc | Pomacentridae | Parma polylepis | native | Banded parma | |
| Mulliformes | Mullidae | Parupeneus barberinoides | native | Bicolor goatfish | Malapunti |
| Mulliformes | Mullidae | Parupeneus barberinus | native | Dash-and-dot goatfish | Malapunti |
| Mulliformes | Mullidae | Parupeneus ciliatus | native | Whitesaddle goatfish | Saramulyete |
| Mulliformes | Mullidae | Parupeneus crassilabris | native | Two-banded goatfish | Yangutan |
| Mulliformes | Mullidae | Parupeneus cyclostomus | native | Gold-saddle goatfish | Agingoy |
| Mulliformes | Mullidae | Parupeneus heptacanthus | native | Cinnabar goatfish | Malapunti |
| Mulliformes | Mullidae | Parupeneus indicus | native | Indian goatfish | Malapunti |
| Mulliformes | Mullidae | Parupeneus macronemus | native | Long-barbel goatfish | Saramuliete |
| Mulliformes | Mullidae | Parupeneus multifasciatus | native | Manybar goatfish | Malapunti |
| Mulliformes | Mullidae | Parupeneus pleurostigma | native | Sidespot goatfish | Yangutan |
| Mulliformes | Mullidae | Parupeneus rubescens | native | Rosy goatfish | Balaki |
| Mulliformes | Mullidae | Parupeneus spilurus | native | Blackspot goatfish | Saramuliete |
| Myliobatiformes | Dasyatidae | Pastinachus ater | native | Broad cowtail ray | |
| Myliobatiformes | Dasyatidae | Pateobatis fai | native | Pink whipray | |
| Centrarchiformes | Terapontidae | Pelates quadrilineatus | native | Fourlined terapon | Bagaong |
| Acropomatiformes | Pempheridae | Pempheris adusta | native | Dusky sweeper | |
| Acropomatiformes | Pempheridae | Pempheris otaitensis | native | ||
| Acropomatiformes | Pempheridae | Pempheris oualensis | native | Blackspot sweeper | Bulan bulan |
| Acropomatiformes | Pempheridae | Pempheris schwenkii | native | Silver sweeper | Kampitan |
| Acropomatiformes | Pempheridae | Pempheris vanicolensis | native | Vanikoro sweeper | Kampitan |
| Eupercaria/misc | Nemipteridae | Pentapodus aureofasciatus | native | Yellowstripe threadfin bream | |
| Eupercaria/misc | Nemipteridae | Pentapodus bifasciatus | native | White-shouldered whiptail | Abo |
| Eupercaria/misc | Nemipteridae | Pentapodus caninus | native | Small-toothed whiptail | Bilao-bilao |
| Eupercaria/misc | Nemipteridae | Pentapodus emeryii | native | Double whiptail | Bisugong maylawi |
| Eupercaria/misc | Nemipteridae | Pentapodus nagasakiensis | native | Japanese whiptail | Bilawbilaw |
| Eupercaria/misc | Nemipteridae | Pentapodus paradiseus | native | Paradise whiptail | Bisugong maylawi |
| Eupercaria/misc | Nemipteridae | Pentapodus setosus | native | Butterfly whiptail | Bisugo |
| Eupercaria/misc | Nemipteridae | Pentapodus trivittatus | native | Three-striped whiptail | Isdang bato |
| Gobiiformes | Oxudercidae | Periophthalmus argentilineatus | native | Barred mudskipper | Bia |
| Gobiiformes | Oxudercidae | Periophthalmus barbarus | native | Atlantic mudskipper | |
| Gobiiformes | Oxudercidae | Periophthalmus kalolo | native | Common mudskipper | Bia |
| Tetraodontiformes | Monacanthidae | Pervagor aspricaudus | native | Orangetail filefish | |
| Tetraodontiformes | Monacanthidae | Pervagor janthinosoma | native | Blackbar filefish | Sulay bagyo |
| Tetraodontiformes | Monacanthidae | Pervagor melanocephalus | native | Redtail filefish | Sulay bagyo |
| Tetraodontiformes | Monacanthidae | Pervagor nigrolineatus | native | Blacklined filefish | Sulay bagyo |
| Blenniiformes | Blenniidae | Petroscirtes breviceps | native | Striped poison-fang blenny mimic | |
| Blenniiformes | Blenniidae | Petroscirtes mitratus | native | Floral blenny | |
| Blenniiformes | Blenniidae | Petroscirtes variabilis | native | Variable sabretooth blenny | |
| Blenniiformes | Blenniidae | Petroscirtes xestus | native | Xestus sabretooth blenny | |
| Cichliformes | Pholidichthyidae | Pholidichthys leucotaenia | native | Convict blenny | |
| Ovalentaria/misc | Pseudochromidae | Pholidochromis cerasina | native | Cherry dottyback | |
| Trachichthyiformes | Anomalopidae | Photoblepharon palpebratum | native | Eyelight fish | |
| Acanthuriformes | Leiognathidae | Photolateralis stercorarius | native | Oblong slipmouth | Sapsap |
| Syngnathiformes | Syngnathidae | Phoxocampus belcheri | native | Rock pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Phoxocampus diacanthus | native | Spined pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Phoxocampus tetrophthalmus | native | Trunk-barred pipefish | Dagum-dagum |
| Gobiiformes | Gobiidae | Phyllogobius platycephalops | native | Slender spongegoby | |
| Anguilliformes | Ophichthidae | Phyllophichthus xenodontus | native | Flappy snake-eel | |
| Ovalentaria/misc | Pseudochromidae | Pictichromis diadema | native | Diadem dottyback | Lulukdayan |
| Ovalentaria/misc | Pseudochromidae | Pictichromis porphyrea | native | Magenta dottyback | |
| Eupercaria/misc | Lutjanidae | Pinjalo lewisi | native | Slender pinjalo | |
| Eupercaria/misc | Lutjanidae | Pinjalo pinjalo | native | Pinjalo | Maya maya |
| Anguilliformes | Ophichthidae | Pisodonophis cancrivorus | native | Longfin snake-eel | |
| Blenniiformes | Blenniidae | Plagiotremus laudandus | native | Bicolour fangblenny | |
| Blenniiformes | Blenniidae | Plagiotremus rhinorhynchos | native | Bluestriped fangblenny | |
| Blenniiformes | Blenniidae | Plagiotremus tapeinosoma | native | Piano fangblenny | |
| Mugiliformes | Mugilidae | Planiliza melinoptera | native | Otomebora mullet | Araran |
| Acanthuriformes | Ephippidae | Platax batavianus | native | Humpback batfish | Dahong-gabi |
| Acanthuriformes | Ephippidae | Platax boersii | native | Golden spadefish | |
| Acanthuriformes | Ephippidae | Platax orbicularis | native | Orbicular batfish | Kilyong |
| Acanthuriformes | Ephippidae | Platax pinnatus | native | Dusky batfish | Bayang |
| Acanthuriformes | Ephippidae | Platax teira | native | Longfin batfish | Darapugan |
| Beloniformes | Belonidae | Platybelone platyura | native | Keeled needlefish | Balo |
| Carangiformes | Carangidae | Platycaranx chrysophrys | native | Longnose trevally | Sibong amusin |
| Carangiformes | Carangidae | Platycaranx malabaricus | native | Malabar trevally | Sala-salamin |
| Carangiformes | Carangidae | Platycaranx talamparoides | native | Imposter trevally | Talakitok |
| Perciformes/Scorpaenoidei | Platycephalidae | Platycephalus indicus | native | Bartail flathead | Sunog |
| Eupercaria/misc | Haemulidae | Plectorhinchus albovittatus | native | Two-striped sweetlips | Labian |
| Eupercaria/misc | Haemulidae | Plectorhinchus chaetodonoides | native | Harlequin sweetlips | Alatan |
| Eupercaria/misc | Haemulidae | Plectorhinchus chrysotaenia | native | Yellow-striped sweetlips | Labian |
| Eupercaria/misc | Haemulidae | Plectorhinchus diagrammus | native | Striped sweetlips | Labian |
| Eupercaria/misc | Haemulidae | Plectorhinchus flavomaculatus | native | Lemonfish | Bakoko |
| Eupercaria/misc | Haemulidae | Plectorhinchus gibbosus | native | Harry hotlips | Bakoko |
| Eupercaria/misc | Haemulidae | Plectorhinchus lessonii | native | Lesson's thicklip | Panapsapan |
| Eupercaria/misc | Haemulidae | Plectorhinchus lineatus | native | Yellowbanded sweetlips | Alatan |
| Eupercaria/misc | Haemulidae | Plectorhinchus pictus | native | Trout sweetlips | Alatan |
| Eupercaria/misc | Haemulidae | Plectorhinchus picus | native | Painted sweetlip | Bakoko |
| Eupercaria/misc | Haemulidae | Plectorhinchus polytaenia | native | Ribboned sweetlips | Labian |
| Eupercaria/misc | Haemulidae | Plectorhinchus schotaf | native | Minstrel sweetlips | Labian |
| Eupercaria/misc | Haemulidae | Plectorhinchus vittatus | native | Indian Ocean oriental sweetlips | Alatan |
| Perciformes/Serranoidei | Anthiadidae | Plectranthias inermis | native | Chequered perchlet | |
| Perciformes/Serranoidei | Anthiadidae | Plectranthias longimanus | native | Longfin perchlet | |
| Perciformes/Serranoidei | Anthiadidae | Plectranthias winniensis | native | Redblotch basslet | |
| Ovalentaria/misc | Pomacentridae | Plectroglyphidodon aureus | native | Golden gregory | |
| Ovalentaria/misc | Pomacentridae | Plectroglyphidodon dickii | native | Blackbar devil | Palata |
| Ovalentaria/misc | Pomacentridae | Plectroglyphidodon fasciolatus | native | Pacific gregory | Palata |
| Ovalentaria/misc | Pomacentridae | Plectroglyphidodon imparipennis | native | Brighteye damselfish | |
| Ovalentaria/misc | Pomacentridae | Plectroglyphidodon johnstonianus | native | Johnston Island damsel | |
| Ovalentaria/misc | Pomacentridae | Plectroglyphidodon leucozonus | native | Singlebar devil | |
| Ovalentaria/misc | Pomacentridae | Plectroglyphidodon obreptus | native | Western gregory | Sumbangan |
| Ovalentaria/misc | Pomacentridae | Plectroglyphidodon phoenixensis | native | Phoenix devil | |
| Perciformes/Serranoidei | Epinephelidae | Plectropomus areolatus | native | Squaretail coralgrouper | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Plectropomus laevis | native | Blacksaddled coralgrouper | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Plectropomus leopardus | native | Leopard coralgrouper | Lapu lapu |
| Perciformes/Serranoidei | Epinephelidae | Plectropomus maculatus | native | Spotted coralgrouper | Lapu-lapu |
| Perciformes/Serranoidei | Epinephelidae | Plectropomus oligacanthus | native | Highfin coralgrouper | Mambong tigre |
| Holocentriformes | Holocentridae | Plectrypops lima | native | Shy soldier | |
| Ovalentaria/misc | Plesiopidae | Plesiops cephalotaenia | native | Headstripe longfin | Headstripe longfin |
| Ovalentaria/misc | Plesiopidae | Plesiops coeruleolineatus | native | Crimsontip longfin | |
| Ovalentaria/misc | Plesiopidae | Plesiops corallicola | native | Bluegill longfin | |
| Ovalentaria/misc | Plesiopidae | Plesiops gracilis | native | Threadfin longfin | |
| Ovalentaria/misc | Plesiopidae | Plesiops oxycephalus | native | Sharp-nosed longfin | |
| Ovalentaria/misc | Plesiopidae | Plesiops verecundus | native | Redtip longfin | |
| Gobiiformes | Gobiidae | Pleurosicya boldinghi | native | Soft-coral goby | |
| Gobiiformes | Gobiidae | Pleurosicya carolinensis | native | Caroline Islands ghost goby | |
| Gobiiformes | Gobiidae | Pleurosicya coerulea | native | Blue coral ghost goby | |
| Gobiiformes | Gobiidae | Pleurosicya elongata | native | Cling goby | Slender spongegoby |
| Gobiiformes | Gobiidae | Pleurosicya micheli | native | Michel's ghost goby | |
| Gobiiformes | Gobiidae | Pleurosicya mossambica | native | Toothy goby | |
| Gobiiformes | Gobiidae | Pleurosicya muscarum | native | Ghost goby | |
| Gobiiformes | Gobiidae | Pleurosicya plicata | native | Plicata ghost goby | |
| Mugiliformes | Mugilidae | Plicomugil labiosus | native | Hornlip mullet | Agwas |
| Siluriformes | Plotosidae | Plotosus lineatus | native | Striped eel catfish | Ito |
| Perciformes/Serranoidei | Grammistidae | Pogonoperca punctata | native | ||
| Carangaria/misc | Polynemidae | Polydactylus sexfilis | native | Sixfinger threadfin | |
| Acanthuriformes | Pomacanthidae | Pomacanthus annularis | native | Bluering angelfish | Baro-baro |
| Acanthuriformes | Pomacanthidae | Pomacanthus imperator | native | Emperor angelfish | Baro-baro |
| Acanthuriformes | Pomacanthidae | Pomacanthus navarchus | native | Bluegirdled angelfish | Paru-parung dagat |
| Acanthuriformes | Pomacanthidae | Pomacanthus semicirculatus | native | Semicircle angelfish | Balukbuk |
| Acanthuriformes | Pomacanthidae | Pomacanthus sexstriatus | native | Sixbar angelfish | Balukbuk |
| Acanthuriformes | Pomacanthidae | Pomacanthus xanthometopon | native | Yellowface angelfish | Paro-paro |
| Ovalentaria/misc | Pomacentridae | Pomacentrus adelus | native | Obscure damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus alexanderae | native | Alexander's damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus amboinensis | native | Ambon damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus armillatus | native | Bracelet damselfish | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus auriventris | native | Goldbelly damsel | |
| Ovalentaria/misc | Pomacentridae | Pomacentrus bankanensis | native | Speckled damselfish | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus brachialis | native | Charcoal damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus burroughi | native | Burrough's damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus cheraphilus | native | ||
| Ovalentaria/misc | Pomacentridae | Pomacentrus chrysurus | native | Whitetail damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus coelestis | native | Neon damselfish | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus cuneatus | native | Wedgespot damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus emarginatus | native | Outer-reef damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus geminospilus | native | Sabah damsel | |
| Ovalentaria/misc | Pomacentridae | Pomacentrus grammorhynchus | native | Bluespot damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus lepidogenys | native | Scaly damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus littoralis | native | Smoky damsel | Baro-baro |
| Ovalentaria/misc | Pomacentridae | Pomacentrus melanochir | native | Indonesian damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus moluccensis | native | Lemon damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus nagasakiensis | native | Nagasaki damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus nigromanus | native | Goldback damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus nigromarginatus | native | Blackmargined damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus opisthostigma | native | Brown damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus pavo | native | Sapphire damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus philippinus | native | Philippine damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus reidi | native | Reid's damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus simsiang | native | Blueback damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus smithi | native | Smith's damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus stigma | native | Blackspot damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus taeniometopon | native | Brackish damsel | Palata |
| Ovalentaria/misc | Pomacentridae | Pomacentrus tripunctatus | native | Threespot damsel | Puyong dagat |
| Ovalentaria/misc | Pomacentridae | Pomacentrus vaiuli | native | Ocellate damselfish | |
| Ovalentaria/misc | Pomacentridae | Pomachromis richardsoni | native | Richardson's reef-damsel | |
| Eupercaria/misc | Haemulidae | Pomadasys kaakan | native | Javelin grunter | Ikuran |
| Eupercaria/misc | Haemulidae | Pomadasys maculatus | native | Saddle grunt | Ibalay |
| Blenniiformes | Blenniidae | Praealticus bilineatus | native | White-dotted rockskipper | |
| Eupercaria/misc | Priacanthidae | Priacanthus blochii | native | Paeony bulleye | Siga |
| Eupercaria/misc | Priacanthidae | Priacanthus hamrur | native | Moontail bullseye | Baga |
| Eupercaria/misc | Priacanthidae | Priacanthus macracanthus | native | Red bigeye | Siga |
| Eupercaria/misc | Priacanthidae | Priacanthus tayenus | native | Purple-spotted bigeye | Siga |
| Gobiiformes | Gobiidae | Priolepis agrena | native | Network reefgoby | |
| Gobiiformes | Gobiidae | Priolepis cincta | native | Banded reef goby | Bia |
| Gobiiformes | Gobiidae | Priolepis fallacincta | native | Eightbar reefgoby | Bia |
| Gobiiformes | Gobiidae | Priolepis inhaca | native | Brick goby | |
| Gobiiformes | Gobiidae | Priolepis kappa | native | Kappa reefgoby | |
| Gobiiformes | Gobiidae | Priolepis nocturna | native | Blackbarred reefgoby | |
| Gobiiformes | Gobiidae | Priolepis nuchifasciata | native | Orange reef-goby | |
| Gobiiformes | Gobiidae | Priolepis pallidicincta | native | Palebarred goby | |
| Gobiiformes | Gobiidae | Priolepis semidoliata | native | Half-barred goby | Bia |
| Gobiiformes | Gobiidae | Priolepis vexilla | native | Ribbon reefgoby | |
| Kurtiformes | Apogonidae | Pristiapogon exostigma | native | Narrowstripe cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Pristiapogon fraenatus | native | Bridled cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Pristiapogon kallopterus | native | Iridescent cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Pristicon rhodopterus | native | Redfin cardinalfish | |
| Kurtiformes | Apogonidae | Pristicon rufus | native | Rufus cardinalfish | |
| Kurtiformes | Apogonidae | Pristicon trimaculatus | native | Three-spot cardinalfish | Dangat |
| Eupercaria/misc | Lutjanidae | Pristipomoides argyrogrammicus | native | Ornate jobfish | Maya maya |
| Eupercaria/misc | Lutjanidae | Pristipomoides flavipinnis | native | Golden eye jobfish | Taloto-on |
| Ovalentaria/misc | Pomacentridae | Pristotis obtusirostris | native | Gulf damselfish | |
| Carangaria/misc | Latidae | Psammoperca waigiensis | native | Waigieu seaperch | Matang pusa |
| Tetraodontiformes | Monacanthidae | Pseudalutarius nasicornis | native | Rhinoceros leatherjacket | |
| Kurtiformes | Apogonidae | Pseudamia amblyuroptera | native | White-jawed cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Pseudamia gelatinosa | native | Gelatinous cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Pseudamia hayashii | native | Hayashi's cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Pseudamia zonata | native | Paddlefish cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Pseudamiops gracilicauda | native | Graceful-tailed cardinalfish | Dangat |
| Perciformes/Serranoidei | Anthiadidae | Pseudanthias bimaculatus | native | Two-spot basslet | |
| Perciformes/Serranoidei | Anthiadidae | Pseudanthias cichlops | native | ||
| Perciformes/Serranoidei | Anthiadidae | Pseudanthias engelhardi | native | Orangebar anthias | |
| Perciformes/Serranoidei | Anthiadidae | Pseudanthias fasciatus | native | One-stripe anthias | |
| Perciformes/Serranoidei | Anthiadidae | Pseudanthias huchtii | native | Red-cheeked fairy basslet | Lapu-lapu |
| Perciformes/Serranoidei | Anthiadidae | Pseudanthias hutomoi | native | Hutomo's anthias | Kalamuy |
| Perciformes/Serranoidei | Anthiadidae | Pseudanthias hypselosoma | native | Stocky anthias | Arawas |
| Perciformes/Serranoidei | Anthiadidae | Pseudanthias luzonensis | native | Yellowlined anthias | |
| Perciformes/Serranoidei | Anthiadidae | Pseudanthias pleurotaenia | native | Square-spot fairy basslet | Squarespot anthias |
| Perciformes/Serranoidei | Anthiadidae | Pseudanthias randalli | native | Randall's fairy basslet | |
| Perciformes/Serranoidei | Anthiadidae | Pseudanthias rubrizonatus | native | Red-belted anthias | |
| Perciformes/Serranoidei | Anthiadidae | Pseudanthias squamipinnis | native | Sea goldie | |
| Perciformes/Serranoidei | Anthiadidae | Pseudanthias ventralis | native | Longfin anthias | |
| Anguilliformes | Muraenidae | Pseudechidna brummeri | native | White ribbon eel | |
| Tetraodontiformes | Balistidae | Pseudobalistes flavimarginatus | native | Yellowmargin triggerfish | Kapuul |
| Tetraodontiformes | Balistidae | Pseudobalistes fuscus | native | Yellow-spotted triggerfish | Papakol |
| Eupercaria/misc | Labridae | Pseudocheilinops ataenia | native | Pelvic-spot wrasse | |
| Eupercaria/misc | Labridae | Pseudocheilinus evanidus | native | Striated wrasse | Ulugsuy |
| Eupercaria/misc | Labridae | Pseudocheilinus hexataenia | native | Sixline wrasse | Mameng |
| Eupercaria/misc | Labridae | Pseudocheilinus octotaenia | native | Eight-lined wrasse | |
| Eupercaria/misc | Labridae | Pseudocheilinus tetrataenia | native | Four-lined wrasse | |
| Ovalentaria/misc | Pseudochromidae | Pseudochromis bitaeniatus | native | Double-striped dottyback | |
| Ovalentaria/misc | Pseudochromidae | Pseudochromis colei | endemic | False Bandit Dottyback | False Bandit Dottyback |
| Ovalentaria/misc | Pseudochromidae | Pseudochromis cyanotaenia | native | Surge dottyback | |
| Ovalentaria/misc | Pseudochromidae | Pseudochromis eichleri | endemic | Eichler’s Dottyback | Eichler’s Dottyback |
| Ovalentaria/misc | Pseudochromidae | Pseudochromis elongatus | native | Elongate dottyback | |
| Ovalentaria/misc | Pseudochromidae | Pseudochromis fuligifinis | native | Soot-tail Dottyback | Soot-tail Dottyback |
| Ovalentaria/misc | Pseudochromidae | Pseudochromis fuscus | native | Brown dottyback | Buklak |
| Ovalentaria/misc | Pseudochromidae | Pseudochromis luteus | native | ||
| Ovalentaria/misc | Pseudochromidae | Pseudochromis marshallensis | native | Marshall Is. dottyback | |
| Ovalentaria/misc | Pseudochromidae | Pseudochromis moorei | native | Jaguar dottyback | Jaguar dottyback |
| Ovalentaria/misc | Pseudochromidae | Pseudochromis perspicillatus | native | Southeast Asian blackstripe dottyback | |
| Ovalentaria/misc | Pseudochromidae | Pseudochromis ransonneti | native | Karimunjawa dottyback | Buklak |
| Ovalentaria/misc | Pseudochromidae | Pseudochromis striatus | native | Striated dottyback | Striated dottyback |
| Ovalentaria/misc | Pseudochromidae | Pseudochromis tapeinosoma | native | Blackmargin dottyback | |
| Eupercaria/misc | Labridae | Pseudocoris bleekeri | native | Philippines wrasse | |
| Eupercaria/misc | Labridae | Pseudocoris heteroptera | native | Torpedo wrasse | Taysiw |
| Eupercaria/misc | Labridae | Pseudocoris yamashiroi | native | Redspot wrasse | |
| Eupercaria/misc | Labridae | Pseudodax moluccanus | native | Chiseltooth wrasse | |
| Perciformes/Serranoidei | Grammistidae | Pseudogramma erythrea | native | Caban podge | |
| Perciformes/Serranoidei | Grammistidae | Pseudogramma pectoralis | native | Pectoral podge | |
| Perciformes/Serranoidei | Grammistidae | Pseudogramma polyacantha | native | Honeycomb podge | |
| Eupercaria/misc | Labridae | Pseudojuloides mesostigma | native | Sidespot wrasse | |
| Eupercaria/misc | Labridae | Pseudojuloides splendens | native | Splendid pencil wrasse | |
| Tetraodontiformes | Monacanthidae | Pseudomonacanthus macrurus | native | Strap-weed file-fish | Pakol |
| Ovalentaria/misc | Pseudochromidae | Pseudoplesiops annae | native | Anna's dottyback | |
| Ovalentaria/misc | Pseudochromidae | Pseudoplesiops rosae | native | Rose Island basslet | |
| Ovalentaria/misc | Pseudochromidae | Pseudoplesiops typus | native | Hidden basslet | |
| Eupercaria/misc | Labridae | Pteragogus cryptus | native | Cryptic wrasse | |
| Eupercaria/misc | Labridae | Pteragogus enneacanthus | native | Cockerel wrasse | Ulugsuy |
| Eupercaria/misc | Labridae | Pteragogus flagellifer | native | Cocktail wrasse | |
| Eupercaria/misc | Labridae | Pteragogus guttatus | native | Sneaky wrasse | |
| Gobiiformes | Microdesmidae | Ptereleotris evides | native | Blackfin dartfish | Takluy takluy |
| Gobiiformes | Microdesmidae | Ptereleotris grammica | native | Lined dartfish | |
| Gobiiformes | Microdesmidae | Ptereleotris hanae | native | Blue hana goby | Takluy takluy |
| Gobiiformes | Microdesmidae | Ptereleotris heteroptera | native | Blacktail goby | |
| Gobiiformes | Microdesmidae | Ptereleotris kallista | native | Beautiful Dartfish | |
| Gobiiformes | Microdesmidae | Ptereleotris microlepis | native | Blue gudgeon | |
| Gobiiformes | Microdesmidae | Ptereleotris rubristigma | native | Redspot dartfish | |
| Gobiiformes | Microdesmidae | Ptereleotris uroditaenia | native | Flagtail dartfish | |
| Gobiiformes | Microdesmidae | Ptereleotris zebra | native | Chinese zebra goby | |
| Eupercaria/misc | Caesionidae | Pterocaesio chrysozona | native | Goldband fusilier | Dalagang bukid |
| Eupercaria/misc | Caesionidae | Pterocaesio digramma | native | Double-lined fusilier | Solid |
| Eupercaria/misc | Caesionidae | Pterocaesio lativittata | native | Wide-band fusilier | |
| Eupercaria/misc | Caesionidae | Pterocaesio marri | native | Marr's fusilier | Solid |
| Eupercaria/misc | Caesionidae | Pterocaesio pisang | native | Banana fusilier | Dalagang bukid |
| Eupercaria/misc | Caesionidae | Pterocaesio randalli | native | Randall's fusilier | Apingan |
| Eupercaria/misc | Caesionidae | Pterocaesio tessellata | native | One-stripe fusilier | Dalagang bukid |
| Eupercaria/misc | Caesionidae | Pterocaesio tile | native | Dark-banded fusilier | Dalagang bukid |
| Eupercaria/misc | Caesionidae | Pterocaesio trilineata | native | Three-stripe fusilier | Dalagang bukid |
| Perciformes/Scorpaenoidei | Scorpaenidae | Pterois antennata | native | Broadbarred firefish | Ampo |
| Perciformes/Scorpaenoidei | Scorpaenidae | Pterois lunulata | native | Luna lion fish | Lampurok |
| Perciformes/Scorpaenoidei | Scorpaenidae | Pterois mombasae | native | Frillfin turkeyfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Pterois paucispinula | native | ||
| Perciformes/Scorpaenoidei | Scorpaenidae | Pterois radiata | native | Radial firefish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Pterois russelii | native | Plaintail turkeyfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Pterois volitans | native | Red lionfish | Danuy ranuy |
| Ovalentaria/misc | Pomacentridae | Pycnochromis amboinensis | native | Ambon chromis | Kapal |
| Ovalentaria/misc | Pomacentridae | Pycnochromis atripes | native | Dark-fin chromis | |
| Ovalentaria/misc | Pomacentridae | Pycnochromis caudalis | native | Blue-axil chromis | |
| Ovalentaria/misc | Pomacentridae | Pycnochromis delta | native | Deep reef chromis | |
| Ovalentaria/misc | Pomacentridae | Pycnochromis leucurus | native | Whitetail chromis | |
| Ovalentaria/misc | Pomacentridae | Pycnochromis lineatus | native | Lined chromis | |
| Ovalentaria/misc | Pomacentridae | Pycnochromis margaritifer | native | Bicolor chromis | |
| Ovalentaria/misc | Pomacentridae | Pycnochromis ovatiformis | native | Ovate chromis | Palata |
| Ovalentaria/misc | Pomacentridae | Pycnochromis pacifica | native | Pacific bronze Chromis | |
| Ovalentaria/misc | Pomacentridae | Pycnochromis retrofasciatus | native | Black-bar chromis | Palata |
| Ovalentaria/misc | Pomacentridae | Pycnochromis vanderbilti | native | Vanderbilt's chromis | |
| Acanthuriformes | Pomacanthidae | Pygoplites diacanthus | native | Regal angelfish | Baro-baro |
| Perciformes/Serranoidei | Anthiadidae | Pyronotanthias flavoguttatus | native | Yellow-spotted anthias | |
| Perciformes/Serranoidei | Anthiadidae | Pyronotanthias lori | native | Lori's anthias | |
| Perciformes/Serranoidei | Anthiadidae | Pyronotanthias parvirostris | native | Sunset anthias | |
| Perciformes/Serranoidei | Anthiadidae | Pyronotanthias smithvanizi | native | Princess anthias | |
| Carangiformes | Rachycentridae | Rachycentron canadum | native | Cobia | Dalag dagat |
| Carangiformes | Echeneidae | Remora remora | native | Shark sucker | Kine |
| Kurtiformes | Apogonidae | Rhabdamia gracilis | native | Luminous cardinalfish | Dangat |
| Blenniiformes | Blenniidae | Rhabdoblennius nitidus | native | Barred-chin blenny | |
| Eupercaria/misc | Sparidae | Rhabdosargus sarba | native | Goldlined seabream | |
| Rhinopristiformes | Rhinidae | Rhina ancylostomus | native | Bowmouth guitarfish | Anonan |
| Tetraodontiformes | Balistidae | Rhinecanthus aculeatus | native | White-banded triggerfish | Kaputput |
| Tetraodontiformes | Balistidae | Rhinecanthus rectangulus | native | Wedge-tail triggerfish | Pakoy |
| Tetraodontiformes | Balistidae | Rhinecanthus verrucosus | native | Blackbelly triggerfish | Kaputput |
| Anguilliformes | Muraenidae | Rhinomuraena quaesita | native | Ribbon moray | Malibanos |
| Perciformes/Scorpaenoidei | Scorpaenidae | Rhinopias frondosa | native | Weedy scorpionfish | |
| Myliobatiformes | Rhinopteridae | Rhinoptera javanica | native | Flapnose ray | Paging dalimanok |
| Tetraodontiformes | Ostraciidae | Rhynchostracion nasus | native | Shortnose boxfish | Baka-bakahan |
| Perciformes/Scorpaenoidei | Tetrarogidae | Richardsonichthys leucogaster | native | Whiteface waspfish | |
| Acanthuriformes | Chaetodontidae | Roa haraguchiae | native | White-spine butterfyfsh | White-spine butterfyfsh |
| Acanthuriformes | Chaetodontidae | Roa modesta | native | Brown-banded butterflyfish | Paruparung dagat |
| Acanthuriformes | Chaetodontidae | Roa rumsfeldi | native | Deep-blackfin butterflyfish | Deep-blackfin butterflyfish |
| Perciformes/Scorpaenoidei | Platycephalidae | Rogadius serratus | native | Serrated flathead | |
| Perciformes/Scorpaenoidei | Platycephalidae | Rogadius welanderi | native | Welander's flathead | |
| Tetraodontiformes | Monacanthidae | Rudarius excelsus | native | Diamond leatherjacket | |
| Tetraodontiformes | Monacanthidae | Rudarius minutus | native | Minute leatherjacket | |
| Blenniiformes | Blenniidae | Salarias alboguttatus | native | White-spotted blenny | |
| Blenniiformes | Blenniidae | Salarias ceramensis | native | Seram blenny | Anay-anay |
| Blenniiformes | Blenniidae | Salarias fasciatus | native | Jewelled blenny | Talingkuk |
| Blenniiformes | Blenniidae | Salarias guttatus | native | Breast-spot blenny | |
| Blenniiformes | Blenniidae | Salarias patzneri | native | Patzner's blenny | |
| Blenniiformes | Blenniidae | Salarias segmentatus | native | Segmented blenny | |
| Blenniiformes | Blenniidae | Salarias sinuosus | native | Fringelip blenny | |
| Perciformes/Serranoidei | Epinephelidae | Saloptia powelli | native | Golden grouper | |
| Pleuronectiformes | Samaridae | Samariscus triocellatus | native | Three-spot righteye flounder | |
| Holocentriformes | Holocentridae | Sargocentron caudimaculatum | native | Silverspot squirrelfish | Sigang batuhan |
| Holocentriformes | Holocentridae | Sargocentron cornutum | native | Threespot squirrelfish | Ganting |
| Holocentriformes | Holocentridae | Sargocentron diadema | native | Crown squirrelfish | Sigang batuhan |
| Holocentriformes | Holocentridae | Sargocentron ittodai | native | Samurai squirrelfish | Baga-baga |
| Holocentriformes | Holocentridae | Sargocentron melanospilos | native | Blackblotch squirrelfish | Baga-baga |
| Holocentriformes | Holocentridae | Sargocentron microstoma | native | Smallmouth squirrelfish | |
| Holocentriformes | Holocentridae | Sargocentron praslin | native | Dark-striped squirrelfish | |
| Holocentriformes | Holocentridae | Sargocentron punctatissimum | native | Speckled squirrelfish | Baga-baga |
| Holocentriformes | Holocentridae | Sargocentron rubrum | native | Redcoat | Baga-baga |
| Holocentriformes | Holocentridae | Sargocentron spiniferum | native | Sabre squirrelfish | Baga-baga |
| Holocentriformes | Holocentridae | Sargocentron tiere | native | Blue lined squirrelfish | Baga-baga |
| Holocentriformes | Holocentridae | Sargocentron tiereoides | native | Pink squirrelfish | Baga-baga |
| Holocentriformes | Holocentridae | Sargocentron violaceum | native | Violet squirrelfish | Sigang batuhan |
| Aulopiformes | Synodontidae | Saurida gracilis | native | Gracile lizardfish | Kalaso |
| Aulopiformes | Synodontidae | Saurida nebulosa | native | Clouded lizardfish | Kalaso |
| Aulopiformes | Synodontidae | Saurida tumbil | native | Greater lizardfish | Kalaso |
| Aulopiformes | Synodontidae | Saurida undosquamis | native | Brushtooth lizardfish | Kamutihan |
| Eupercaria/misc | Scaridae | Scarus altipinnis | native | Filament-finned parrotfish | Loro |
| Eupercaria/misc | Scaridae | Scarus chameleon | native | Chameleon parrotfish | Loro |
| Eupercaria/misc | Scaridae | Scarus dimidiatus | native | Yellowbarred parrotfish | Malunaw |
| Eupercaria/misc | Scaridae | Scarus festivus | native | Festive parrotfish | Mulmol |
| Eupercaria/misc | Scaridae | Scarus flavipectoralis | native | Yellowfin parrotfish | Loro |
| Eupercaria/misc | Scaridae | Scarus forsteni | native | Forsten's parrotfish | Isdang loro |
| Eupercaria/misc | Scaridae | Scarus frenatus | native | Bridled parrotfish | Isdang loro |
| Eupercaria/misc | Scaridae | Scarus fuscocaudalis | native | Darktail parrotfish | |
| Eupercaria/misc | Scaridae | Scarus ghobban | native | Blue-barred parrotfish | Malunaw |
| Eupercaria/misc | Scaridae | Scarus globiceps | native | Globehead parrotfish | Loro |
| Eupercaria/misc | Scaridae | Scarus hypselopterus | native | Yellow-tail parrotfish | Yapot |
| Eupercaria/misc | Scaridae | Scarus niger | native | Dusky parrotfish | Loro |
| Eupercaria/misc | Scaridae | Scarus oviceps | native | Dark capped parrotfish | Loro |
| Eupercaria/misc | Scaridae | Scarus ovifrons | native | Knobsnout parrotfish | |
| Eupercaria/misc | Scaridae | Scarus prasiognathos | native | Singapore parrotfish | Loro |
| Eupercaria/misc | Scaridae | Scarus psittacus | native | Common parrotfish | Isdang loro |
| Eupercaria/misc | Scaridae | Scarus quoyi | native | Quoy's parrotfish | Mulmul |
| Eupercaria/misc | Scaridae | Scarus rivulatus | native | Rivulated parrotfish | Aliyakyak |
| Eupercaria/misc | Scaridae | Scarus rubroviolaceus | native | Ember parrotfish | Yapot |
| Eupercaria/misc | Scaridae | Scarus schlegeli | native | Yellowband parrotfish | Loro |
| Eupercaria/misc | Scaridae | Scarus spinus | native | Greensnout parrotfish | Loro |
| Eupercaria/misc | Scaridae | Scarus tricolor | native | Tricolour parrotfish | Yaput |
| Eupercaria/misc | Scaridae | Scarus xanthopleura | native | Red parrotfish | |
| Gobiiformes | Schindleriidae | Schindleria macrodentata | native | Schindler’s large-toothed goby | Schindler’s large-toothed goby |
| Anguilliformes | Ophichthidae | Schultzidia retropinnis | native | Fringe-lipped worm eel | |
| Anguilliformes | Ophichthidae | Scolecenchelys gymnota | native | Indo-Pacific slender worm-eel | |
| Anguilliformes | Ophichthidae | Scolecenchelys laticaudata | native | Redfin worm-eel | |
| Anguilliformes | Ophichthidae | Scolecenchelys macroptera | native | Narrow worm eel | |
| Eupercaria/misc | Nemipteridae | Scolopsis affinis | native | Peters' monocle bream | Buruba |
| Eupercaria/misc | Nemipteridae | Scolopsis bilineata | native | Two-lined monocle bream | Asoos |
| Eupercaria/misc | Nemipteridae | Scolopsis bimaculata | native | Thumbprint monocle bream | Tagisang lawin |
| Eupercaria/misc | Nemipteridae | Scolopsis ciliata | native | Saw-jawed monocle bream | Letekan |
| Eupercaria/misc | Nemipteridae | Scolopsis lineata | native | Striped monocle bream | Buruba |
| Eupercaria/misc | Nemipteridae | Scolopsis margaritifera | native | Pearly monocle bream | Buruba |
| Eupercaria/misc | Nemipteridae | Scolopsis monogramma | native | Monogrammed monocle bream | Batuhanon |
| Eupercaria/misc | Nemipteridae | Scolopsis temporalis | native | Bald-spot monocle bream | Tingin |
| Eupercaria/misc | Nemipteridae | Scolopsis trilineata | native | Three-lined monocle bream | Tingin |
| Eupercaria/misc | Nemipteridae | Scolopsis vosmeri | native | Whitecheek monocle bream | Tagisang lawin |
| Eupercaria/misc | Nemipteridae | Scolopsis xenochrous | native | Oblique-barred monocle bream | Tagisang lawin |
| Carangiformes | Carangidae | Scomberoides commersonnianus | native | Talang queenfish | Lali |
| Carangiformes | Carangidae | Scomberoides lysan | native | Doublespotted queenfish | Dorado |
| Carangiformes | Carangidae | Scomberoides tala | native | Barred queenfish | Dorado |
| Carangiformes | Carangidae | Scomberoides tol | native | Needlescaled queenfish | Talang-talang |
| Perciformes/Scorpaenoidei | Scorpaenidae | Scorpaenodes albaiensis | native | Longfingered scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Scorpaenodes guamensis | native | Guam scorpionfish | Ampo |
| Perciformes/Scorpaenoidei | Scorpaenidae | Scorpaenodes hirsutus | native | Hairy scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Scorpaenodes kelloggi | native | Kellogg's scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Scorpaenodes minor | native | Minor scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Scorpaenodes parvipinnis | native | Lowfin scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Scorpaenodes scaber | native | Pygmy scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Scorpaenodes varipinnis | native | Blotchfin scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Scorpaenopsis diabolus | native | False stonefish | Ampo |
| Perciformes/Scorpaenoidei | Scorpaenidae | Scorpaenopsis macrochir | native | Flasher scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Scorpaenopsis oxycephalus | native | Tassled scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Scorpaenopsis papuensis | native | Papuan scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Scorpaenopsis venosa | native | Raggy scorpionfish | Ampo |
| Perciformes/Scorpaenoidei | Scorpaenidae | Scorpaenopsis vittapinna | native | Bandfin scorpionfish | |
| Anguilliformes | Muraenidae | Scuticaria tigrina | native | Tiger reef-eel | Malibanos |
| Carangiformes | Carangidae | Scyris indica | native | Indian threadfish | Talakitok salamin |
| Perciformes/Scorpaenoidei | Scorpaenidae | Sebastapistes cyanostigma | native | Yellowspotted scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Sebastapistes fowleri | native | Pigmy scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Sebastapistes mauritiana | native | Spineblotch scorpionfish | |
| Perciformes/Scorpaenoidei | Scorpaenidae | Sebastapistes strongia | native | Barchin scorpionfish | |
| Carangiformes | Carangidae | Selar boops | native | Oxeye scad | Matang Baka |
| Carangiformes | Carangidae | Selar crumenophthalmus | native | Bigeye scad | Mat-an |
| Carangiformes | Carangidae | Selaroides leptolepis | native | Yellowstripe scad | Salay-salay ginto |
| Carangiformes | Carangidae | Seriola dumerili | native | Greater amberjack | Dorado |
| Carangiformes | Carangidae | Seriola rivoliana | native | Longfin yellowtail | Talakitok |
| Carangiformes | Carangidae | Seriolina nigrofasciata | native | Blackbanded trevally | Tonto |
| Perciformes/Serranoidei | Anthiadidae | Serranocirrhitus latus | native | Hawkfish anthias | |
| Acanthuriformes | Siganidae | Siganus argenteus | native | Streamlined spinefoot | Alama |
| Acanthuriformes | Siganidae | Siganus canaliculatus | native | White-spotted spinefoot | Balanglen kuyog |
| Acanthuriformes | Siganidae | Siganus corallinus | native | Blue-spotted spinefoot | Balangin |
| Acanthuriformes | Siganidae | Siganus fuscescens | native | Mottled spinefoot | Balawis |
| Acanthuriformes | Siganidae | Siganus guttatus | native | Orange-spotted spinefoot | Balawis |
| Acanthuriformes | Siganidae | Siganus javus | native | Streaked spinefoot | Lusay |
| Acanthuriformes | Siganidae | Siganus lineatus | native | Golden-lined spinefoot | Balanglin |
| Acanthuriformes | Siganidae | Siganus puellus | native | Masked spinefoot | Balawis |
| Acanthuriformes | Siganidae | Siganus punctatissimus | native | Peppered spinefoot | Balanglin |
| Acanthuriformes | Siganidae | Siganus punctatus | native | Goldspotted spinefoot | Balanglin |
| Acanthuriformes | Siganidae | Siganus spinus | native | Little spinefoot | Balawis batuhan |
| Acanthuriformes | Siganidae | Siganus unimaculatus | native | Blotched foxface | Alama |
| Acanthuriformes | Siganidae | Siganus vermiculatus | native | Vermiculated spinefoot | Dangit |
| Acanthuriformes | Siganidae | Siganus virgatus | native | Barhead spinefoot | Balangin |
| Acanthuriformes | Siganidae | Siganus vulpinus | native | Foxface | Baka |
| Gobiiformes | Gobiidae | Signigobius biocellatus | native | Twinspot goby | Bia |
| Eupercaria/misc | Sillaginidae | Sillago sihama | native | Silver sillago | Aso-os |
| Syngnathiformes | Syngnathidae | Siokunichthys breviceps | native | Softcoral pipefish | Dagum-dagum |
| Syngnathiformes | Syngnathidae | Siokunichthys nigrolineatus | native | Mushroom-coral pipefish | Dagum-dagum |
| Kurtiformes | Apogonidae | Siphamia argentea | native | Silver siphonfish | |
| Kurtiformes | Apogonidae | Siphamia corallicola | native | Coral siphonfish | |
| Kurtiformes | Apogonidae | Siphamia elongata | native | Elongate siphonfish | |
| Kurtiformes | Apogonidae | Siphamia fistulosa | native | Fistulose cardinalfish | |
| Kurtiformes | Apogonidae | Siphamia fuscolineata | native | Crown-of-thorns cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Siphamia jebbi | native | Jebb's siphonfish | |
| Kurtiformes | Apogonidae | Siphamia majimai | native | Striped siphonfish | |
| Kurtiformes | Apogonidae | Siphamia tubifer | native | Tubifer cardinalfish | Dangat |
| Pleuronectiformes | Soleidae | Soleichthys heterorhinos | native | Black-tip sole | |
| Syngnathiformes | Solenostomidae | Solenostomus armatus | native | Armored pipefish | |
| Syngnathiformes | Solenostomidae | Solenostomus cyanopterus | native | Ghost pipefish | |
| Syngnathiformes | Solenostomidae | Solenostomus paradoxus | native | Harlequin ghost pipefish | |
| Kurtiformes | Apogonidae | Sphaeramia nematoptera | native | Pajama cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Sphaeramia orbicularis | native | Orbiculate cardinalfish | Dangat |
| Carangaria/misc | Sphyraenidae | Sphyraena acutipinnis | native | Sharpfin barracuda | Balyos |
| Carangaria/misc | Sphyraenidae | Sphyraena barracuda | native | Great barracuda | Baracuda |
| Carangaria/misc | Sphyraenidae | Sphyraena flavicauda | native | Yellowtail barracuda | Balyos |
| Carangaria/misc | Sphyraenidae | Sphyraena forsteri | native | Bigeye barracuda | Batig |
| Carangaria/misc | Sphyraenidae | Sphyraena jello | native | Pickhandle barracuda | Bulios |
| Carangaria/misc | Sphyraenidae | Sphyraena obtusata | native | Obtuse barracuda | Batog |
| Carangaria/misc | Sphyraenidae | Sphyraena putnamae | native | Sawtooth barracuda | Balyos |
| Carangaria/misc | Sphyraenidae | Sphyraena qenie | native | Blackfin barracuda | Balyos |
| Clupeiformes | Spratelloididae | Spratelloides delicatulus | native | Delicate round herring | Dilis bahura |
| Ovalentaria/misc | Opistognathidae | Stalix versluysi | native | Versluys' jawfish | |
| Blenniiformes | Blenniidae | Stanulus seychellensis | native | Seychelle's blenny | |
| Ovalentaria/misc | Pomacentridae | Stegastes albifasciatus | native | Whitebar gregory | Palata |
| Ovalentaria/misc | Pomacentridae | Stegastes lacrymatus | native | Whitespotted devil | Palata |
| Ovalentaria/misc | Pomacentridae | Stegastes nigricans | native | Dusky farmerfish | Palata |
| Ovalentaria/misc | Pomacentridae | Stegastes punctatus | native | Blunt snout gregory | Palata |
| Orectolobiformes | Stegostomatidae | Stegostoma tigrinum | native | Zebra shark | Pating |
| Atheriniformes | Atherinidae | Stenatherina panatela | native | Panatella silverside | Gono |
| Eupercaria/misc | Labridae | Stethojulis bandanensis | native | Red shoulder wrasse | Lulukdayan |
| Eupercaria/misc | Labridae | Stethojulis interrupta | native | Cutribbon wrasse | Mameng |
| Eupercaria/misc | Labridae | Stethojulis strigiventer | native | Three-ribbon wrasse | Lulukdayan |
| Eupercaria/misc | Labridae | Stethojulis trilineata | native | Three-lined rainbowfish | Lulukdayan |
| Clupeiformes | Engraulidae | Stolephorus insignus | native | Emblem anchovy | Emblem anchovy |
| Clupeiformes | Engraulidae | Stolephorus insularis | native | Hardenberg's anchovy | Bolinao na kurisan |
| Gobiiformes | Gobiidae | Stonogobiops nematodes | native | Filament-finned prawn-goby | Bia |
| Gobiiformes | Gobiidae | Stonogobiops xanthorhinicus | native | Yellownose prawn-goby | |
| Beloniformes | Belonidae | Strongylura incisa | native | Reef needlefish | Haba |
| Beloniformes | Belonidae | Strongylura leiura | native | Banded needlefish | Balitut |
| Anguilliformes | Muraenidae | Strophidon sathete | native | Slender giant moray | Malibanos |
| Gobiiformes | Gobiidae | Sueviota lachneri | native | Lachner's dwarfgoby | |
| Eupercaria/misc | Labridae | Suezichthys arquatus | native | Rainbow slender wrasse | |
| Eupercaria/misc | Labridae | Suezichthys gracilis | native | Slender wrasse | |
| Tetraodontiformes | Balistidae | Sufflamen bursa | native | Boomerang triggerfish | Kaputput |
| Tetraodontiformes | Balistidae | Sufflamen chrysopterum | native | Halfmoon triggerfish | Kaputput |
| Tetraodontiformes | Balistidae | Sufflamen fraenatum | native | Masked triggerfish | Pakoy |
| Perciformes/Scorpaenoidei | Platycephalidae | Sunagocia arenicola | native | Broadhead flathead | |
| Perciformes/Scorpaenoidei | Platycephalidae | Sunagocia otaitensis | native | Fringelip flathead | |
| Perciformes/Serranoidei | Grammistidae | Suttonia lineata | native | Freckleface podge | |
| Eupercaria/misc | Lutjanidae | Symphorichthys spilurus | native | Sailfin snapper | Maya maya |
| Eupercaria/misc | Lutjanidae | Symphorus nematophorus | native | Chinamanfish | Alsis |
| Perciformes/Scorpaenoidei | Synanceiidae | Synanceia horrida | native | Estuarine stonefish | Sumalapau |
| Perciformes/Scorpaenoidei | Synanceiidae | Synanceia verrucosa | native | Stonefish | Gatasan |
| Callionymiformes | Callionymidae | Synchiropus circularis | native | Circled dragonet | |
| Callionymiformes | Callionymidae | Synchiropus laddi | native | Ladd's dragonet | |
| Callionymiformes | Callionymidae | Synchiropus morrisoni | native | Morrison's dragonet | |
| Callionymiformes | Callionymidae | Synchiropus moyeri | native | Moyer's dragonet | |
| Callionymiformes | Callionymidae | Synchiropus ocellatus | native | Ocellated dragonet | Bunog |
| Callionymiformes | Callionymidae | Synchiropus picturatus | native | Picturesque dragonet | |
| Callionymiformes | Callionymidae | Synchiropus splendidus | native | Mandarinfish | Bunog |
| Syngnathiformes | Syngnathidae | Syngnathoides biaculeatus | native | Alligator pipefish | Dagum-dagum |
| Aulopiformes | Synodontidae | Synodus binotatus | native | Two-spot lizard fish | Bubule |
| Aulopiformes | Synodontidae | Synodus dermatogenys | native | Sand lizardfish | Tika |
| Aulopiformes | Synodontidae | Synodus doaki | native | Arrowtooth lizardfish | Bubule |
| Aulopiformes | Synodontidae | Synodus indicus | native | Indian lizardfish | |
| Aulopiformes | Synodontidae | Synodus jaculum | native | Lighthouse lizardfish | |
| Aulopiformes | Synodontidae | Synodus rubromarmoratus | native | Redmarbled lizardfish | |
| Aulopiformes | Synodontidae | Synodus variegatus | native | Variegated lizardfish | Kalaso |
| Kurtiformes | Apogonidae | Taeniamia biguttata | native | Twinspot cardinalfish | |
| Kurtiformes | Apogonidae | Taeniamia buruensis | native | Buru cardinalfish | |
| Kurtiformes | Apogonidae | Taeniamia fucata | native | Orangelined cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Taeniamia kagoshimana | native | ||
| Kurtiformes | Apogonidae | Taeniamia macroptera | native | Dusky-tailed cardinalfish | |
| Kurtiformes | Apogonidae | Taeniamia melasma | native | Blackspot cardinalfish | |
| Kurtiformes | Apogonidae | Taeniamia zosterophora | native | Blackbelted cardinalfish | Dangat |
| Perciformes/Scorpaenoidei | Scorpaenidae | Taenianotus triacanthus | native | Leaf scorpionfish | |
| Myliobatiformes | Dasyatidae | Taeniura lymma | native | Ribbontail stingray | Pagi |
| Myliobatiformes | Dasyatidae | Taeniurops meyeni | native | Round ribbontail ray | Pagi |
| Centrarchiformes | Terapontidae | Terapon theraps | native | Largescaled terapon | Bagaong |
| Perciformes/Scorpaenoidei | Tetrarogidae | Tetraroge barbata | native | Bearded roguefish | |
| Tetraodontiformes | Ostraciidae | Tetrosomus gibbosus | native | Humpback turretfish | Tabarong |
| Eupercaria/misc | Labridae | Thalassoma amblycephalum | native | Bluntheaded wrasse | Mameng |
| Eupercaria/misc | Labridae | Thalassoma hardwicke | native | Sixbar wrasse | Lulukdayan |
| Eupercaria/misc | Labridae | Thalassoma jansenii | native | Jansen's wrasse | Mameng |
| Eupercaria/misc | Labridae | Thalassoma lunare | native | Moon wrasse | Lulukdayan |
| Eupercaria/misc | Labridae | Thalassoma lutescens | native | Yellow-brown wrasse | Mameng |
| Eupercaria/misc | Labridae | Thalassoma purpureum | native | Surge wrasse | Mameng |
| Eupercaria/misc | Labridae | Thalassoma quinquevittatum | native | Fivestripe wrasse | Bankilan |
| Eupercaria/misc | Labridae | Thalassoma trilobatum | native | Christmas wrasse | |
| Perciformes/Scorpaenoidei | Platycephalidae | Thysanophrys chiltonae | native | Longsnout flathead | |
| Gobiiformes | Gobiidae | Tomiyamichthys gomezi | native | Gomez' shrimpgoby | |
| Gobiiformes | Gobiidae | Tomiyamichthys lanceolatus | native | Lanceolate shrimpgoby | |
| Gobiiformes | Gobiidae | Tomiyamichthys latruncularius | native | Fan shrimp-goby | |
| Gobiiformes | Gobiidae | Tomiyamichthys nudus | native | Scaleless shrimpgoby | |
| Gobiiformes | Gobiidae | Tomiyamichthys oni | native | Monster shrimpgoby | |
| Aulopiformes | Synodontidae | Trachinocephalus trachinus | native | Snakefish | |
| Carangiformes | Carangidae | Trachinotus baillonii | native | Small spotted dart | Pampano |
| Carangiformes | Carangidae | Trachinotus blochii | native | Snubnose pompano | Ampahan |
| Syngnathiformes | Syngnathidae | Trachyrhamphus bicoarctatus | native | Double-ended pipefish | Dagum-dagum |
| Carcharhiniformes | Carcharhinidae | Triaenodon obesus | native | Whitetip reef shark | Pating |
| Gobiiformes | Trichonotidae | Trichonotus elegans | native | Long-rayed sand-diver | |
| Gobiiformes | Trichonotidae | Trichonotus setiger | native | Spotted sand-diver | |
| Gobiiformes | Gobiidae | Trimma agrena | native | Fishnet pygmygoby | |
| Gobiiformes | Gobiidae | Trimma annosum | native | Grey-bearded pygmygoby | |
| Gobiiformes | Gobiidae | Trimma benjamini | native | Ring-eye pygmygoby | |
| Gobiiformes | Gobiidae | Trimma caesiura | native | Caesiura pygmygoby | |
| Gobiiformes | Gobiidae | Trimma caudomaculatum | native | Blotch-tailed pygmygoby | |
| Gobiiformes | Gobiidae | Trimma emeryi | native | Emery's pygmygoby | |
| Gobiiformes | Gobiidae | Trimma fangi | native | Fang's pygmygoby | |
| Gobiiformes | Gobiidae | Trimma grammistes | native | Black-striped pygmygoby | |
| Gobiiformes | Gobiidae | Trimma hayashii | native | Four-eye pygmygoby | |
| Gobiiformes | Gobiidae | Trimma hoesei | native | Forktail pygmygoby | |
| Gobiiformes | Gobiidae | Trimma macrophthalmus | native | Large-eyed pygmygoby | |
| Gobiiformes | Gobiidae | Trimma maiandros | native | Zigzag pygmygoby | |
| Gobiiformes | Gobiidae | Trimma marinae | native | Princess pygmygoby | |
| Gobiiformes | Gobiidae | Trimma meranyx | native | Day-night pygmy goby | |
| Gobiiformes | Gobiidae | Trimma naudei | native | Naude's pygmygoby | |
| Gobiiformes | Gobiidae | Trimma okinawae | native | Orange-red pygmygoby | Bia |
| Gobiiformes | Gobiidae | Trimma randalli | native | Randall’s pygmygoby | |
| Gobiiformes | Gobiidae | Trimma rubromaculatum | native | Red-spotted pygmygoby | |
| Gobiiformes | Gobiidae | Trimma striatum | native | Red-lined pygmygoby | Bia |
| Gobiiformes | Gobiidae | Trimma taylori | native | Yellow pygmygoby | |
| Gobiiformes | Gobiidae | Trimma tevegae | native | Tevegae pygmygoby | Kultit |
| Gobiiformes | Gobiidae | Trimma trioculatum | native | Three-eyed pygmygoby | |
| Gobiiformes | Gobiidae | Trimma wangunui | native | Wangunu’s pygmygoby | |
| Gobiiformes | Gobiidae | Trimmatom macropodus | native | Bigfoot dwarfgoby | |
| Gobiiformes | Gobiidae | Trimmatom pharus | native | Lifehouse dwarfgoby | |
| Tetraodontiformes | Triodontidae | Triodon macropterus | native | Threetooth puffer | |
| Gobiiformes | Gobiidae | Tryssogobius colini | native | Colin's fairygoby | |
| Carangiformes | Carangidae | Turrum coeruleopinnatum | native | Coastal trevally | Samin-samin |
| Carangiformes | Carangidae | Turrum fulvoguttatum | native | Yellowspotted trevally | Sibong balbon |
| Carangiformes | Carangidae | Turrum gymnostethus | native | Bludger | |
| Beloniformes | Belonidae | Tylosurus acus | native | Agujon needlefish | |
| Beloniformes | Belonidae | Tylosurus crocodilus | native | Hound needlefish | Kambabalo |
| Beloniformes | Belonidae | Tylosurus melanotus | native | Keel-jawed needle fish | Balo |
| Beloniformes | Belonidae | Tylosurus punctulatus | native | Spotted long-tom | Batali |
| Blenniiformes | Tripterygiidae | Ucla xenogrammus | native | Largemouth triplefin | |
| Ophidiiformes | Dinematichthyidae | Ungusurculus philippinensis | native | Philippines viviparous brotula | |
| Mulliformes | Mullidae | Upeneus japonicus | native | Japanese goatfish | Saramuliete |
| Mulliformes | Mullidae | Upeneus moluccensis | native | Goldband goatfish | Agingoy |
| Mulliformes | Mullidae | Upeneus taeniopterus | native | Finstripe goatfish | Saramulyete |
| Mulliformes | Mullidae | Upeneus tragula | native | Freckled goatfish | Batuhan |
| Mulliformes | Mullidae | Upeneus vittatus | native | Yellowstriped goatfish | Saramuliete |
| Perciformes/Uranoscopoidei | Uranoscopidae | Uranoscopus bicinctus | native | Marbled stargazer | |
| Carangiformes | Carangidae | Uraspis helvola | native | Whitetongue jack | Pampano |
| Carangiformes | Carangidae | Uraspis uraspis | native | Whitemouth jack | Pampano |
| Myliobatiformes | Dasyatidae | Urogymnus asperrimus | native | Porcupine whipray | Pagi |
| Myliobatiformes | Dasyatidae | Urogymnus granulatus | native | Mangrove whipray | |
| Anguilliformes | Muraenidae | Uropterygius concolor | native | Unicolor snake moray | Payangitan |
| Anguilliformes | Muraenidae | Uropterygius fuscoguttatus | native | Brown spotted snake moray | Payangitan |
| Anguilliformes | Muraenidae | Uropterygius macrocephalus | native | Needle-tooth moray | |
| Anguilliformes | Muraenidae | Uropterygius marmoratus | native | Marbled reef-eel | Malibanos |
| Anguilliformes | Muraenidae | Uropterygius polyspilus | native | Large-spotted snake moray | |
| Anguilliformes | Muraenidae | Uropterygius xanthopterus | native | Freckleface reef-eel | Payangitan |
| Gobiiformes | Gobiidae | Valenciennea helsdingenii | native | Twostripe goby | Bia |
| Gobiiformes | Gobiidae | Valenciennea immaculata | native | Red-lined sleeper | |
| Gobiiformes | Gobiidae | Valenciennea longipinnis | native | Long-finned goby | Bia |
| Gobiiformes | Gobiidae | Valenciennea muralis | native | Mural goby | Bia |
| Gobiiformes | Gobiidae | Valenciennea parva | native | Parva goby | |
| Gobiiformes | Gobiidae | Valenciennea puellaris | native | Maiden goby | Bakuli |
| Gobiiformes | Gobiidae | Valenciennea randalli | native | Greenband goby | Talingkuk |
| Gobiiformes | Gobiidae | Valenciennea sexguttata | native | Sixspot goby | Bia |
| Gobiiformes | Gobiidae | Valenciennea strigata | native | Blueband goby | Bia |
| Gobiiformes | Gobiidae | Valenciennea wardii | native | Ward's sleeper | |
| Gobiiformes | Gobiidae | Valenciennea yanoi | native | ||
| Gobiiformes | Gobiidae | Vanderhorstia ambanoro | native | Ambanoro prawn-goby | |
| Gobiiformes | Gobiidae | Vanderhorstia mertensi | native | Mertens' prawn-goby | |
| Gobiiformes | Gobiidae | Vanderhorstia ornatissima | native | Ornate prawn-goby | |
| Gobiiformes | Gobiidae | Vanderhorstia phaeosticta | native | Yellowfoot shrimpgoby | |
| Perciformes/Serranoidei | Epinephelidae | Variola albimarginata | native | White-edged lyretail | Abo-abo |
| Perciformes/Serranoidei | Epinephelidae | Variola louti | native | Yellow-edged lyretail | Lapu lapung señora |
| Kurtiformes | Apogonidae | Verulux cypselurus | native | Swallowtail cardinalfish | Dangat |
| Eupercaria/misc | Lethrinidae | Wattsia mossambica | native | Mozambique large-eye bream | |
| Eupercaria/misc | Labridae | Wetmorella albofasciata | native | Whitebanded sharpnose wrasse | |
| Eupercaria/misc | Labridae | Wetmorella nigropinnata | native | Sharpnose wrasse | |
| Eupercaria/misc | Labridae | Wetmorella tanakai | native | Tanaka's wrasse | |
| Tetraodontiformes | Balistidae | Xanthichthys auromarginatus | native | Gilded triggerfish | Papakol |
| Tetraodontiformes | Balistidae | Xanthichthys lineopunctatus | native | Striped triggerfish | Sungo |
| Gobiiformes | Xenisthmidae | Xenisthmus polyzonatus | native | Bullseye wriggler | |
| Eupercaria/misc | Labridae | Xenojulis margaritacea | native | Finspot wrasse | Mameng |
| Eupercaria/misc | Labridae | Xiphocheilus typus | native | Blue-banded wrasse | Mameng |
| Acanthuriformes | Zanclidae | Zanclus cornutus | native | Moorish idol | Kalay kalay |
| Kurtiformes | Apogonidae | Zapogon evermanni | native | Evermann's cardinalfish | |
| Acanthuriformes | Acanthuridae | Zebrasoma flavescens | native | Yellow tang | Labahita |
| Acanthuriformes | Acanthuridae | Zebrasoma scopas | native | Twotone tang | Brushtail tang |
| Acanthuriformes | Acanthuridae | Zebrasoma velifer | native | Sailfin tang | Tudluan |
| Pleuronectiformes | Soleidae | Zebrias zebra | native | Zebra sole | |
| Beloniformes | Zenarchopteridae | Zenarchopterus buffonis | native | Buffon's river-garfish | Buging |
| Beloniformes | Zenarchopteridae | Zenarchopterus dispar | native | Feathered river-garfish | Kansusuit |
| Beloniformes | Zenarchopteridae | Zenarchopterus gilli | native | Viviparous halfbeak | |
| Kurtiformes | Apogonidae | Zoramia fragilis | native | Fragile cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Zoramia gilberti | native | Gilbert's cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Zoramia leptacanthus | native | Threadfin cardinalfish | Kungkungan |
| Kurtiformes | Apogonidae | Zoramia perlita | native | Pearly cardinalfish | Dangat |
| Kurtiformes | Apogonidae | Zoramia viridiventer | native |