| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Andaman Sea | Sea/Bay/Gulf | native | 3287 |
| Arabian Sea | Sea/Bay/Gulf | native | 3287 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 33390 |
| Bay of Bengal | Sea/Bay/Gulf | native | 3287 |
| Chilika Lake/Lagoon | Lagoon | native | 95460 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 7300 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 33390 |
| Gulf of Aden | Sea/Bay/Gulf | native | 3287 |
| Gulf of Oman | Sea/Bay/Gulf | native | 3287 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 3287 |
| Honda Bay | Sea/Bay/Gulf | native | 71000 |
| Indian Ocean | Sea/Bay/Gulf | native | 33390 |
| Indonesian Sea | Sea/Bay/Gulf | native | 3287 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| North Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Pacific Ocean | Sea/Bay/Gulf | native | 7300 |
| Persian Gulf | Sea/Bay/Gulf | native | 3287 |
| Red Sea | Sea/Bay/Gulf | error | 84159 |
| Shark Bay | Sea/Bay/Gulf | native | 115274 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 3287 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 3287 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 53416 |
| West Central Australian Shelf | Sea/Bay/Gulf | native | 115274 |
| Yellow Sea | Sea/Bay/Gulf | native | 3287 |