| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 5736 |
| Arabian Sea | Sea/Bay/Gulf | native | 97685 |
| Bay of Bengal | Sea/Bay/Gulf | native | 97685 |
| Bohai Sea | Sea/Bay/Gulf | native | 117610 |
| Chiku River | River (basin) | native | 36073 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| East China Sea | Sea/Bay/Gulf | native | 11230 |
| Erhjen River | River (basin) | native | 36073 |
| Gulf of Oman | Sea/Bay/Gulf | native | 47613 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 9804 |
| Indian Ocean | Sea/Bay/Gulf | native | 9804 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7050 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5978 |
| Pagbilao Bay | Sea/Bay/Gulf | native | 11338 |
| Persian Gulf | Sea/Bay/Gulf | native | 97685 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| Shiliao River | River (basin) | native | 36073 |
| Sikao Creek | River (basin) | native | 52823 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 31075 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 45419 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |