| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Arabian Sea | Sea/Bay/Gulf | native | 45255 |
| Australian | Zoogeographic realm | native | 2847 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Erhjen River | River (basin) | native | 36073 |
| Indian Ocean | Sea/Bay/Gulf | native | 4343 |
| Indonesian Sea | Sea/Bay/Gulf | native | 4343 |
| Kaoping River | River (basin) | native | 36073 |
| Mekong | River (basin) | native | 12693 |
| Oriental | Zoogeographic realm | native | 12693 |
| Pacific Ocean | Sea/Bay/Gulf | native | 12693 |
| Pagbilao Bay | Sea/Bay/Gulf | native | 11338 |
| Sabaki | River (basin) | native | 52331 |
| Shihtsao River | River (basin) | native | 36073 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Taal Lake | Lake | native | 12165 |
| Tanshui River | River (basin) | native | 36073 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |