| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Australian | Zoogeographic realm | native | 41640 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 7300 |
| Ethiopian | Zoogeographic realm | native | 30558 |
| Indian Ocean | Sea/Bay/Gulf | native | 6799 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7050 |
| Kuroshio Current | Sea/Bay/Gulf | native | 26066 |
| Naujan Lake | Lake | native | 13446 |
| North Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Oriental | Zoogeographic realm | native | 4833 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Polynesian Waters | Sea/Bay/Gulf | native | 7050 |
| Sabaki | River (basin) | native | 30558 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 30558 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Taal Lake | Lake | native | 80679 |