| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 4391 |
| Andaman Sea | Sea/Bay/Gulf | native | 48636 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 4966 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 7247 |
| Gulf of Oman | Sea/Bay/Gulf | native | 11441 |
| Gulf of Thailand | Sea/Bay/Gulf | native | |
| Indian Ocean | Sea/Bay/Gulf | native | 7247 |
| Indonesian Sea | Sea/Bay/Gulf | native | 8631 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 4966 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 4966 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 4966 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 68964 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 119494 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 45419 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 53416 |
| Yellow Sea | Sea/Bay/Gulf | native | 7247 |