| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Indian Ocean | Sea/Bay/Gulf | native | 3132 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5978 |
| North Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Pacific Ocean | Sea/Bay/Gulf | native | 3132 |
| Peng-hu Island | Sea/Bay/Gulf | questionable | 55073 |
| Shiliao River | River (basin) | questionable | 36073 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |