| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 2334 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Gulf of Oman | Sea/Bay/Gulf | native | 11441 |
| Hsiao-liu-chiu | Sea/Bay/Gulf | native | 43515 |
| Indian Ocean | Sea/Bay/Gulf | native | 11441 |
| Indonesian Sea | Sea/Bay/Gulf | native | 8631 |
| Lutao Island | Sea/Bay/Gulf | native | 11104 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Pacific Ocean | Sea/Bay/Gulf | native | 2334 |
| Panay Gulf | Sea/Bay/Gulf | native | 42831 |
| Peng-hu Island | Sea/Bay/Gulf | native | 43515 |
| Persian Gulf | Sea/Bay/Gulf | native | 68964 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Shark Bay | Sea/Bay/Gulf | native | 116003 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 31740 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Spratly Islands | Sea/Bay/Gulf | native | 48445 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 45419 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |
| Yun-gan | Sea/Bay/Gulf | native | 43515 |