| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Andaman Sea | Sea/Bay/Gulf | native | 37792 |
| Bataraza | Sea/Bay/Gulf | native | 114805 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 2331 |
| Dauin-Apo I. | Sea/Bay/Gulf | native | 127519 |
| Davao Gulf | Sea/Bay/Gulf | native | 126188 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 1920 |
| Indian Ocean | Sea/Bay/Gulf | native | 1920 |
| Indonesian Sea | Sea/Bay/Gulf | native | 8631 |
| Kuroshio Current | Sea/Bay/Gulf | native | 1920 |
| Milne Bay | Sea/Bay/Gulf | native | 41468 |
| Moro Gulf | Sea/Bay/Gulf | native | 106380 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2331 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2331 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 37792 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Polynesian Waters | Sea/Bay/Gulf | native | 1920 |
| Sofronio Española | Sea/Bay/Gulf | native | 114805 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 6956 |
| Tahiti I. | Sea/Bay/Gulf | native | 4795 |
| Tawi tawi Bay | Sea/Bay/Gulf | native | 59110 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 53416 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |