| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5285 |
| Arabian Sea | Sea/Bay/Gulf | native | 1602 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 1602 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 2334 |
| Dauin-Apo I. | Sea/Bay/Gulf | native | 127519 |
| Exmouth to Broome | Sea/Bay/Gulf | native | 75154 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Hsiao-liu-chiu | Sea/Bay/Gulf | native | 43515 |
| Indian Ocean | Sea/Bay/Gulf | native | 1602 |
| Indonesian Sea | Sea/Bay/Gulf | native | 1602 |
| Kermadec Island | Sea/Bay/Gulf | native | 106682 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104756 |
| Leeuwin | Sea/Bay/Gulf | native | 75154 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| Manning-Hawkesbury | Sea/Bay/Gulf | native | 75154 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| New Zealand Shelf | Sea/Bay/Gulf | native | 5755 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Peng-hu Island | Sea/Bay/Gulf | native | 43515 |
| Persian Gulf | Sea/Bay/Gulf | native | 1602 |
| Polynesian Waters | Sea/Bay/Gulf | native | 1602 |
| Rapa-Pitcairn | Sea/Bay/Gulf | native | 121505 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Shiliao River | River (basin) | native | 36073 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 31740 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Spratly Islands | Sea/Bay/Gulf | native | 48445 |
| Tahiti I. | Sea/Bay/Gulf | native | 89972 |
| Torres Strait Northern Great Barrier Reef | Sea/Bay/Gulf | native | 75154 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Verde Island Passage | Sea/Bay/Gulf | native | 37603 |
| Wan-li-tung | Sea/Bay/Gulf | native | 43514 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |
| Yun-gan | Sea/Bay/Gulf | native | 43515 |