| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Aruwimi | River (basin) | native | 39599 |
| Chiloango | River (basin) | native | 81650 |
| Congo | River (basin) | native | 93897 |
| Ethiopian | Zoogeographic realm | endemic | 27896 |
| Itimbiri | River (basin) | native | 106290 |
| Kasai | River (basin) | native | 39599 |
| Kienke | River (basin) | native | 81650 |
| Komo | River (basin) | native | 81650 |
| Kouilou-Niari | River (basin) | native | 39599 |
| Kouilou-Niari | River (basin) | native | 81650 |
| Kwango | River (basin) | misidentification | 11970 |
| Kwilu | River (basin) | native | 39599 |
| Léfini-Likouala | River (basin) | native | 39599 |
| Lindi-Tshopo | River (basin) | native | 106290 |
| Loémé | River (basin) | native | 81650 |
| Lokoundje | River (basin) | native | 81650 |
| Lomami | River (basin) | native | 39599 |
| Lower Congo | River (basin) | native | 41585 |
| Lualaba | River (basin) | native | 39599 |
| Lukenie | River (basin) | native | 39599 |
| Lulonga | River (basin) | native | 39599 |
| Mbini | River (basin) | native | 81650 |
| Middle Congo | River (basin) | native | 39599 |
| Mongala | River (basin) | native | 39599 |
| Ntem | River (basin) | native | 81650 |
| Nyanga | River (basin) | native | 81650 |
| Nyong | River (basin) | native | 81650 |
| Ogowe | River (basin) | native | 81650 |
| Pool Malebo | Lake | native | 41585 |
| Ruki | River (basin) | native | 93897 |
| Sanaga | River (basin) | native | 81650 |
| Sangha | River (basin) | native | 39599 |
| Sankuru | River (basin) | native | 39599 |
| Ubangui | River (basin) | native | 39599 |
| Uélé | River (basin) | native | 39599 |
| Upper Lualaba | River (basin) | native | 45616 |
| Upper Zambezi | River (basin) | misidentification | 11970 |
| Wagenia Falls | River (basin) | native | 106245 |
| Zambezi | River (basin) | misidentification | 11970 |