| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 188 |
| Andaman Sea | Sea/Bay/Gulf | native | 188 |
| Arabian Sea | Sea/Bay/Gulf | native | 188 |
| Bay of Bengal | Sea/Bay/Gulf | native | 188 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aden | Sea/Bay/Gulf | native | 188 |
| Gulf of Oman | Sea/Bay/Gulf | native | 188 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 188 |
| Honda Bay | Sea/Bay/Gulf | native | 71000 |
| Indian Ocean | Sea/Bay/Gulf | native | 188 |
| Indonesian Sea | Sea/Bay/Gulf | native | 188 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| North Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Pacific Ocean | Sea/Bay/Gulf | native | 7300 |
| Pangani | River (basin) | native | 122366 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 188 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Sikao Creek | River (basin) | native | 52823 |
| Sogod Bay | Sea/Bay/Gulf | native | 31411 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 188 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 31075 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 40726 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |