| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Exmouth to Broome | Sea/Bay/Gulf | native | 75154 |
| Gulf of Aden | Sea/Bay/Gulf | native | 54476 |
| Hsiao-liu-chiu | Sea/Bay/Gulf | native | 48451 |
| Indian Ocean | Sea/Bay/Gulf | native | 9710 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5296 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5296 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5296 |
| Peng-hu Island | Sea/Bay/Gulf | native | 48451 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 559 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |