| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Coral Sea and GBR | Sea/Bay/Gulf | native | 2334 |
| Davao Gulf | Sea/Bay/Gulf | native | 43437 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Indian Ocean | Sea/Bay/Gulf | native | 3132 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5978 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 2334 |
| Panguil Bay | Sea/Bay/Gulf | native | 47626 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45674 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern Palawan | Sea/Bay/Gulf | native | 11790 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 280 |
| Tañon Strait | Sea/Bay/Gulf | native | 11337 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47588 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |