| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Bangweulu | River (basin) | native | 82238 |
| Chobe | River (basin) | native | 37065 |
| Congo | River (basin) | native | 82238 |
| Ethiopian | Zoogeographic realm | endemic | 3202 |
| Kasai | River (basin) | native | 82238 |
| Kunene | River (basin) | native | 75786 |
| Kwando | River (basin) | native | 37065 |
| Kwango | River (basin) | misidentification | 75786 |
| Liambezi | Lake | native | 37065 |
| Limpopo | River (basin) | native | 75786 |
| Linyanti Swamp | Lake | native | 37065 |
| Middle Zambezi | River (basin) | questionable | 75786 |
| Mweru | Lake | native | 82238 |
| Okavango | River (basin) | native | 75786 |
| Ruvuma | River (basin) | native | 75786 |
| Tanganyika | Lake | misidentification | 78218 |
| Upper Lualaba | River (basin) | native | 82238 |
| Upper Zambezi | River (basin) | native | 95585 |
| Zambezi | River (basin) | native | 78218 |