| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5578 |
| Andaman and Nicobar Islands | Sea/Bay/Gulf | native | 118627 |
| Andaman Sea | Sea/Bay/Gulf | native | 5736 |
| Arabian Sea | Sea/Bay/Gulf | native | 244 |
| Atulayan Bay | Sea/Bay/Gulf | native | 41469 |
| Bay of Bengal | Sea/Bay/Gulf | native | 118627 |
| Carigara Bay | Sea/Bay/Gulf | native | 46323 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 6871 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 244 |
| Gulf of Aden | Sea/Bay/Gulf | native | 117436 |
| Gulf of Oman | Sea/Bay/Gulf | native | 244 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 244 |
| Indian Ocean | Sea/Bay/Gulf | native | 244 |
| Indonesian Sea | Sea/Bay/Gulf | native | 244 |
| Insular Pacific-Hawaiian | Sea/Bay/Gulf | native | 244 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Kuroshio Current | Sea/Bay/Gulf | native | 244 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104756 |
| Leyte Gulf | Sea/Bay/Gulf | native | 31411 |
| Manila Bay | Sea/Bay/Gulf | native | 280 |
| Mediterranean Sea | Sea/Bay/Gulf | questionable | 78469 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| Pacific Ocean | Sea/Bay/Gulf | native | 244 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 121724 |
| Panay Gulf | Sea/Bay/Gulf | native | 42831 |
| Persian Gulf | Sea/Bay/Gulf | native | 244 |
| Polynesian Waters | Sea/Bay/Gulf | native | 244 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| Sardinia Island | Sea/Bay/Gulf | questionable | 13729 |
| Sicily Island | Sea/Bay/Gulf | questionable | 13729 |
| Socotra Archipelago | Sea/Bay/Gulf | native | 117436 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 244 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| South West Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 42484 |
| Tahiti I. | Sea/Bay/Gulf | native | 9997 |
| Tañon Strait | Sea/Bay/Gulf | native | 47736 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 57038 |
| West Central Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| Yellow Sea | Sea/Bay/Gulf | native | 244 |