| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 6798 |
| Australian | Zoogeographic realm | native | 6798 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 6798 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 6798 |
| Indian Ocean | Sea/Bay/Gulf | native | 6798 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7050 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 6798 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 6798 |
| Oriental | Zoogeographic realm | questionable | 6028 |
| Pacific Ocean | Sea/Bay/Gulf | native | 6798 |
| Polynesian Waters | Sea/Bay/Gulf | native | 37816 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 6798 |
| Taal Lake | Lake | native | 12165 |